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  5. Solyc04g009720.1.1

Solyc04g009720.1.1


Description : Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana (sp|q0wmy5|pp365_arath : 319.0)


Gene families : OG0006977 (Archaeplastida) Phylogenetic Tree(s): OG0006977_tree ,
OG_05_0005354 (LandPlants) Phylogenetic Tree(s): OG_05_0005354_tree ,
OG_06_0009081 (SeedPlants) Phylogenetic Tree(s): OG_06_0009081_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g009720.1.1
Cluster HCCA: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
AT5G04810 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Archaeplastida
GSVIVT01034651001 No alias Pentatricopeptide repeat-containing protein At5g04810,... 0.04 Archaeplastida
Gb_31763 No alias Pentatricopeptide repeat-containing protein At5g04810,... 0.04 Archaeplastida
LOC_Os04g58780.1 No alias Pentatricopeptide repeat-containing protein At5g04810,... 0.02 Archaeplastida
Pp3c16_280V3.1 No alias pentatricopeptide (PPR) repeat-containing protein 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004673 protein histidine kinase activity IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
BP GO:0009314 response to radiation IEP Neighborhood
BP GO:0009416 response to light stimulus IEP Neighborhood
BP GO:0009581 detection of external stimulus IEP Neighborhood
BP GO:0009582 detection of abiotic stimulus IEP Neighborhood
BP GO:0009583 detection of light stimulus IEP Neighborhood
BP GO:0009584 detection of visible light IEP Neighborhood
BP GO:0009605 response to external stimulus IEP Neighborhood
BP GO:0009628 response to abiotic stimulus IEP Neighborhood
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Neighborhood
BP GO:0018298 protein-chromophore linkage IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051606 detection of stimulus IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 247 274
IPR000504 RRM_dom 114 186
IPR002885 Pentatricopeptide_repeat 278 325
No external refs found!