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  5. Solyc04g009980.4.1

Solyc04g009980.4.1


Description : Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 OS=Arabidopsis thaliana (sp|q9fgh2|lsh5_arath : 202.0)


Gene families : OG0000579 (Archaeplastida) Phylogenetic Tree(s): OG0000579_tree ,
OG_05_0000324 (LandPlants) Phylogenetic Tree(s): OG_05_0000324_tree ,
OG_06_0000239 (SeedPlants) Phylogenetic Tree(s): OG_06_0000239_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g009980.4.1
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
AT5G58500 LSH5 Protein of unknown function (DUF640) 0.02 Archaeplastida
GSVIVT01021754001 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.04 Archaeplastida
LOC_Os05g39500.1 No alias Protein G1-like8 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Zm00001e031512_P001 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
MF GO:0015267 channel activity IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
MF GO:0022803 passive transmembrane transporter activity IEP Neighborhood
MF GO:0022838 substrate-specific channel activity IEP Neighborhood
CC GO:0031090 organelle membrane IEP Neighborhood
CC GO:0031966 mitochondrial membrane IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
InterPro domains Description Start Stop
IPR006936 ALOG_dom 18 136
No external refs found!