1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc04g009990.3.1

Solyc04g009990.3.1


Description : histone demethylase (PKDM7). transcription factor (JUMONJI)


Gene families : OG0001111 (Archaeplastida) Phylogenetic Tree(s): OG0001111_tree ,
OG_05_0001701 (LandPlants) Phylogenetic Tree(s): OG_05_0001701_tree ,
OG_06_0001587 (SeedPlants) Phylogenetic Tree(s): OG_06_0001587_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g009990.3.1
Cluster HCCA: Cluster_177

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00067p00062020 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.JUMONJI... 0.03 Archaeplastida
AT1G08620 PKDM7D Transcription factor jumonji (jmj) family protein / zinc... 0.02 Archaeplastida
Cre03.g169950 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.01 Archaeplastida
GSVIVT01023517001 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.03 Archaeplastida
GSVIVT01037956001 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.04 Archaeplastida
Gb_09731 No alias transcription factor (JUMONJI) 0.03 Archaeplastida
Gb_27431 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.03 Archaeplastida
MA_91656g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp8g17910.1 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.02 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
BP GO:0006914 autophagy IEP Neighborhood
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
MF GO:0016791 phosphatase activity IEP Neighborhood
BP GO:0035556 intracellular signal transduction IEP Neighborhood
BP GO:0061919 process utilizing autophagic mechanism IEP Neighborhood
InterPro domains Description Start Stop
IPR003349 JmjN 140 173
IPR003889 FYrich_C 1025 1109
IPR004198 Znf_C5HC2 589 640
IPR003347 JmjC_dom 366 482
IPR003888 FYrich_N 976 1018
No external refs found!