Solyc04g011990.3.1

Description : Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum (sp|q6l438|r1a6_solde : 316.0)

Gene families : OG0002721 (Archaeplastida) Phylogenetic Tree(s): OG0002721_tree ,
OG_05_0001818 (LandPlants) Phylogenetic Tree(s): OG_05_0001818_tree ,
OG_06_0000911 (SeedPlants) Phylogenetic Tree(s): OG_06_0000911_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc04g011990.3.1
Cluster	HCCA: Cluster_7

Target	Alias	Description	ECC score	Gene Family Method
Solyc01g087200.3.1	No alias	Putative late blight resistance protein homolog R1A-6...	0.05	Archaeplastida
Solyc02g027080.2.1	No alias	Putative late blight resistance protein homolog R1B-14...	0.05	Archaeplastida
Solyc04g011960.2.1	No alias	Putative late blight resistance protein homolog R1A-6...	0.03	Archaeplastida
Solyc04g015220.4.1	No alias	no hits & (original description: none)	0.05	Archaeplastida
Solyc08g005500.4.1	No alias	Putative late blight resistance protein homolog R1A-6...	0.12	Archaeplastida
Solyc08g074250.3.1	No alias	Putative late blight resistance protein homolog R1A-6...	0.1	Archaeplastida
Solyc10g008230.3.1	No alias	Putative late blight resistance protein homolog R1B-14...	0.05	Archaeplastida
Solyc11g006630.1.1	No alias	Putative late blight resistance protein homolog R1B-12...	0.06	Archaeplastida
Solyc11g006640.3.1	No alias	Putative late blight resistance protein homolog R1A-6...	0.03	Archaeplastida
Solyc11g069020.3.1	No alias	Putative late blight resistance protein homolog R1A-6...	0.04	Archaeplastida
Solyc12g006040.3.1	No alias	Putative late blight resistance protein homolog R1A-6...	0.06	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043531	ADP binding	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0006952	defense response	IEP	Neighborhood
BP	GO:0010215	cellulose microfibril organization	IEP	Neighborhood
BP	GO:0030198	extracellular matrix organization	IEP	Neighborhood
CC	GO:0031224	intrinsic component of membrane	IEP	Neighborhood
CC	GO:0031225	anchored component of membrane	IEP	Neighborhood
BP	GO:0043062	extracellular structure organization	IEP	Neighborhood
CC	GO:0044425	membrane part	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002182	NB-ARC	152	374

External Links

No external refs found!