1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc04g012180.4.1

Solyc04g012180.4.1


Description : A-class RAB GTPase


Gene families : OG0000173 (Archaeplastida) Phylogenetic Tree(s): OG0000173_tree ,
OG_05_0001287 (LandPlants) Phylogenetic Tree(s): OG_05_0001287_tree ,
OG_06_0001319 (SeedPlants) Phylogenetic Tree(s): OG_06_0001319_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g012180.4.1
Cluster HCCA: Cluster_284

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00026380 evm_27.TU.AmTr_v1... Vesicle trafficking.regulation of membrane tethering and... 0.03 Archaeplastida
AMTR_s00068p00145200 evm_27.TU.AmTr_v1... Vesicle trafficking.regulation of membrane tethering and... 0.03 Archaeplastida
AT4G18800 ATHSGBP, RABA1d,... RAB GTPase homolog A1D 0.02 Archaeplastida
AT5G45750 RABA1c, AtRABA1c RAB GTPase homolog A1C 0.03 Archaeplastida
AT5G65270 AtRABA4a, RABA4a RAB GTPase homolog A4A 0.03 Archaeplastida
Cpa|evm.model.tig00020961.97 No alias Vesicle trafficking.regulation of membrane tethering and... 0.03 Archaeplastida
Cre03.g189250 No alias Vesicle trafficking.regulation of membrane tethering and... 0.03 Archaeplastida
Gb_30583 No alias A-class RAB GTPase 0.03 Archaeplastida
LOC_Os05g01480.1 No alias A-class RAB GTPase 0.03 Archaeplastida
LOC_Os05g48980.1 No alias A-class RAB GTPase 0.03 Archaeplastida
LOC_Os09g10940.1 No alias A-class RAB GTPase 0.03 Archaeplastida
MpVg00760.1 No alias No annotation 0.02 Archaeplastida
Zm00001e009602_P001 No alias A-class RAB GTPase 0.02 Archaeplastida
Zm00001e026848_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e033825_P001 No alias A-class RAB GTPase 0.03 Archaeplastida
Zm00001e037250_P001 No alias A-class RAB GTPase 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000813 ESCRT I complex IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006897 endocytosis IEP Neighborhood
BP GO:0007021 tubulin complex assembly IEP Neighborhood
BP GO:0007023 post-chaperonin tubulin folding pathway IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
BP GO:0016197 endosomal transport IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
CC GO:0030008 TRAPP complex IEP Neighborhood
MF GO:0030976 thiamine pyrophosphate binding IEP Neighborhood
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
CC GO:0036452 ESCRT complex IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044440 endosomal part IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
MF GO:0048487 beta-tubulin binding IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0071985 multivesicular body sorting pathway IEP Neighborhood
BP GO:0098657 import into cell IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
MF GO:1901681 sulfur compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001806 Small_GTPase 17 176
No external refs found!