AMTR_s00024p00238500 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00024.271

Description : Chromatin organisation.DNA methylation.canonical RNA-directed DNA methylation pathway.AGO siRNA-integrating factor


Gene families : OG0000124 (Archaeplastida) Phylogenetic Tree(s): OG0000124_tree ,
OG_05_0000677 (LandPlants) Phylogenetic Tree(s): OG_05_0000677_tree ,
OG_06_0000508 (SeedPlants) Phylogenetic Tree(s): OG_06_0000508_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00024p00238500
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01031430001 No alias Chromatin organisation.DNA methylation.canonical... 0.03 Archaeplastida
MA_47087g0010 No alias Protein argonaute 7 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Solyc09g082830.4.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0006066 alcohol metabolic process IEP Neighborhood
BP GO:0006071 glycerol metabolic process IEP Neighborhood
MF GO:0008081 phosphoric diester hydrolase activity IEP Neighborhood
MF GO:0008889 glycerophosphodiester phosphodiesterase activity IEP Neighborhood
MF GO:0016597 amino acid binding IEP Neighborhood
BP GO:0019400 alditol metabolic process IEP Neighborhood
BP GO:0019751 polyol metabolic process IEP Neighborhood
MF GO:0031406 carboxylic acid binding IEP Neighborhood
MF GO:0043177 organic acid binding IEP Neighborhood
BP GO:1901615 organic hydroxy compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR003165 Piwi 675 994
IPR003100 PAZ_dom 397 527
IPR014811 ArgoL1 342 394
No external refs found!