AMTR_s00024p00239810 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00024.276

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.PES-BOP1-WDR12 (PeBoW) complex.BOP1 component


Gene families : OG0005003 (Archaeplastida) Phylogenetic Tree(s): OG0005003_tree ,
OG_05_0005462 (LandPlants) Phylogenetic Tree(s): OG_05_0005462_tree ,
OG_06_0006129 (SeedPlants) Phylogenetic Tree(s): OG_06_0006129_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00024p00239810
Cluster HCCA: Cluster_67

Target Alias Description ECC score Gene Family Method Actions
AT2G40360 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Archaeplastida
Cpa|evm.model.tig00000382.38 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.01 Archaeplastida
Cre10.g417950 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 Archaeplastida
GSVIVT01004116001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 Archaeplastida
LOC_Os07g25440.1 No alias component BOP1 of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.03 Archaeplastida
Pp3c18_14790V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Archaeplastida
Smo165451 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 Archaeplastida
Smo269521 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 Archaeplastida
Solyc01g103720.4.1 No alias component BOP1 of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.03 Archaeplastida
Zm00001e017600_P002 No alias component BOP1 of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003725 double-stranded RNA binding IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004525 ribonuclease III activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 388 425
IPR012953 BOP1_N_dom 130 386
No external refs found!