1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc04g016530.3.1

Solyc04g016530.3.1


Description : AP-endonuclease (ARP)


Gene families : OG0001987 (Archaeplastida) Phylogenetic Tree(s): OG0001987_tree ,
OG_05_0006561 (LandPlants) Phylogenetic Tree(s): OG_05_0006561_tree ,
OG_06_0006638 (SeedPlants) Phylogenetic Tree(s): OG_06_0006638_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g016530.3.1
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00182420 evm_27.TU.AmTr_v1... DNA damage response.DNA repair mechanisms.base excision... 0.02 Archaeplastida
LOC_Os12g18200.1 No alias AP-endonuclease (APE1) 0.02 Archaeplastida
Pp3c24_19470V3.1 No alias DNAse I-like superfamily protein 0.03 Archaeplastida
Smo187330 No alias DNA damage response.DNA repair mechanisms.base excision... 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Neighborhood
MF GO:0015078 proton transmembrane transporter activity IEP Neighborhood
MF GO:0015291 secondary active transmembrane transporter activity IEP Neighborhood
MF GO:0015297 antiporter activity IEP Neighborhood
MF GO:0015298 solute:cation antiporter activity IEP Neighborhood
MF GO:0015299 solute:proton antiporter activity IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Neighborhood
InterPro domains Description Start Stop
IPR005135 Endo/exonuclease/phosphatase 283 530
IPR003034 SAP_dom 86 119
No external refs found!