1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc04g017710.3.1

Solyc04g017710.3.1


Description : C3H zinc finger transcription factor. component MAC5 of non-snRNP MOS4-associated complex


Gene families : OG0003787 (Archaeplastida) Phylogenetic Tree(s): OG0003787_tree ,
OG_05_0004047 (LandPlants) Phylogenetic Tree(s): OG_05_0004047_tree ,
OG_06_0005206 (SeedPlants) Phylogenetic Tree(s): OG_06_0005206_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g017710.3.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00207950 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome-associated... 0.02 Archaeplastida
Cpa|evm.model.tig00021537.17 No alias RNA processing.RNA splicing.spliceosome-associated... 0.02 Archaeplastida
Gb_38162 No alias C3H zinc finger transcription factor. component MAC5 of... 0.02 Archaeplastida
LOC_Os06g07350.1 No alias C3H zinc finger transcription factor. component MAC5 of... 0.05 Archaeplastida
LOC_Os07g18050.1 No alias C3H zinc finger transcription factor. component MAC5 of... 0.03 Archaeplastida
Pp3c2_11360V3.1 No alias CCCH-type zinc fingerfamily protein with RNA-binding domain 0.01 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003713 transcription coactivator activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004455 ketol-acid reductoisomerase activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009081 branched-chain amino acid metabolic process IEP Neighborhood
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0031124 mRNA 3'-end processing IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR032297 Torus 148 194
IPR000504 RRM_dom 230 288
No external refs found!