Solyc04g039950.4.1

Description : component MED13 of kinase module of MEDIATOR transcription co-activator complex

Gene families : OG0005370 (Archaeplastida) Phylogenetic Tree(s): OG0005370_tree ,
OG_05_0006036 (LandPlants) Phylogenetic Tree(s): OG_05_0006036_tree ,
OG_06_0007595 (SeedPlants) Phylogenetic Tree(s): OG_06_0007595_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc04g039950.4.1
Cluster	HCCA: Cluster_233

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00198p00028070	evm_27.TU.AmTr_v1...	RNA biosynthesis.RNA polymerase II-dependent...	0.05	Archaeplastida
AT1G55325	GCT	RNA polymerase II transcription mediators	0.15	Archaeplastida
Cre02.g080300	No alias	No description available	0.02	Archaeplastida
GSVIVT01025465001	No alias	RNA biosynthesis.RNA polymerase II-dependent...	0.09	Archaeplastida
Gb_30550	No alias	component MED13 of kinase module of MEDIATOR...	0.08	Archaeplastida
LOC_Os05g37500.1	No alias	component MED13 of kinase module of MEDIATOR...	0.08	Archaeplastida
MA_10431052g0020	No alias	no hits & (original description: none)	0.04	Archaeplastida
MA_10433289g0010	No alias	No annotation	0.06	Archaeplastida
MA_577306g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_84527g0010	No alias	component MED13 of kinase module of MEDIATOR...	0.1	Archaeplastida
Mp1g01940.1	No alias	component MED13 of kinase module of MEDIATOR...	0.06	Archaeplastida
Pp3c11_22280V3.1	No alias	RNA polymerase II transcription mediators	0.03	Archaeplastida
Pp3c7_4610V3.1	No alias	RNA polymerase II transcription mediators	0.03	Archaeplastida
Smo447924	No alias	RNA biosynthesis.RNA polymerase II-dependent...	0.06	Archaeplastida
Zm00001e036721_P002	No alias	component MED13 of kinase module of MEDIATOR...	0.12	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003712	transcription coregulator activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	None	Extended
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
CC	GO:0016592	mediator complex	IEA	Interproscan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044428	nuclear part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044451	nucleoplasm part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003682	chromatin binding	IEP	Neighborhood
MF	GO:0004402	histone acetyltransferase activity	IEP	Neighborhood
MF	GO:0004652	polynucleotide adenylyltransferase activity	IEP	Neighborhood
MF	GO:0004843	thiol-dependent ubiquitin-specific protease activity	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
BP	GO:0006473	protein acetylation	IEP	Neighborhood
BP	GO:0006475	internal protein amino acid acetylation	IEP	Neighborhood
BP	GO:0006888	ER to Golgi vesicle-mediated transport	IEP	Neighborhood
MF	GO:0008234	cysteine-type peptidase activity	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
BP	GO:0016573	histone acetylation	IEP	Neighborhood
BP	GO:0016579	protein deubiquitination	IEP	Neighborhood
MF	GO:0016779	nucleotidyltransferase activity	IEP	Neighborhood
BP	GO:0018393	internal peptidyl-lysine acetylation	IEP	Neighborhood
BP	GO:0018394	peptidyl-lysine acetylation	IEP	Neighborhood
MF	GO:0019783	ubiquitin-like protein-specific protease activity	IEP	Neighborhood
CC	GO:0030120	vesicle coat	IEP	Neighborhood
CC	GO:0030127	COPII vesicle coat	IEP	Neighborhood
MF	GO:0034212	peptide N-acetyltransferase activity	IEP	Neighborhood
MF	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
BP	GO:0043543	protein acylation	IEP	Neighborhood
BP	GO:0043631	RNA polyadenylation	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
MF	GO:0046914	transition metal ion binding	IEP	Neighborhood
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	IEP	Neighborhood
MF	GO:0070566	adenylyltransferase activity	IEP	Neighborhood
BP	GO:0070646	protein modification by small protein removal	IEP	Neighborhood
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	Neighborhood
MF	GO:0101005	ubiquitinyl hydrolase activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR021643	Mediator_Med13_N_met/fun	2	251
IPR009401	Mediator_Med13	1543	1910

External Links

No external refs found!

Solyc04g039950.4.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation