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  5. Solyc04g049010.3.1

Solyc04g049010.3.1


Description : EBF-modulating exoribonuclease (EIN5/XRN4). exoribonuclease (XRN4)


Gene families : OG0000811 (Archaeplastida) Phylogenetic Tree(s): OG0000811_tree ,
OG_05_0000830 (LandPlants) Phylogenetic Tree(s): OG_05_0000830_tree ,
OG_06_0002236 (SeedPlants) Phylogenetic Tree(s): OG_06_0002236_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g049010.3.1
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000241.175 No alias 5-3 exoribonuclease 3 OS=Arabidopsis thaliana 0.02 Archaeplastida
LOC_Os03g58060.1 No alias EBF-modulating exoribonuclease (EIN5/XRN4).... 0.03 Archaeplastida
MA_10016710g0020 No alias 5-3 exoribonuclease 3 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_141906g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_17503g0010 No alias 5-3 exoribonuclease 3 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_8833695g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Mp3g08820.1 No alias exoribonuclease (RAT1/XRN2) 0.02 Archaeplastida
Pp3c14_10280V3.1 No alias 5\-3\ exoribonuclease 3 0.05 Archaeplastida
Pp3c24_2160V3.1 No alias 5\-3\ exoribonuclease 3 0.05 Archaeplastida
Zm00001e011879_P001 No alias EBF-modulating exoribonuclease (EIN5/XRN4).... 0.04 Archaeplastida
Zm00001e021652_P001 No alias exoribonuclease (RAT1/XRN2) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004527 exonuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006813 potassium ion transport IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0015079 potassium ion transmembrane transporter activity IEP Neighborhood
BP GO:0016073 snRNA metabolic process IEP Neighborhood
BP GO:0016180 snRNA processing IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0034472 snRNA 3'-end processing IEP Neighborhood
BP GO:0034477 U6 snRNA 3'-end processing IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043628 ncRNA 3'-end processing IEP Neighborhood
BP GO:0071804 cellular potassium ion transport IEP Neighborhood
BP GO:0071805 potassium ion transmembrane transport IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR004859 Put_53exo 1 249
No external refs found!