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  5. Solyc04g049920.4.1

Solyc04g049920.4.1


Description : Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana (sp|q9m1s3|arp1_arath : 177.0)


Gene families : OG0000639 (Archaeplastida) Phylogenetic Tree(s): OG0000639_tree ,
OG_05_0000548 (LandPlants) Phylogenetic Tree(s): OG_05_0000548_tree ,
OG_06_0000334 (SeedPlants) Phylogenetic Tree(s): OG_06_0000334_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g049920.4.1
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00080p00053460 evm_27.TU.AmTr_v1... Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00099p00115860 evm_27.TU.AmTr_v1... Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana 0.03 Archaeplastida
AT1G22330 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.1 Archaeplastida
AT1G22910 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 Archaeplastida
AT1G78260 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.07 Archaeplastida
AT3G54770 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.11 Archaeplastida
AT5G53720 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Archaeplastida
Gb_07133 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.02 Archaeplastida
Gb_30439 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.02 Archaeplastida
Gb_39269 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.05 Archaeplastida
LOC_Os01g72834.1 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.04 Archaeplastida
LOC_Os03g17760.1 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.06 Archaeplastida
LOC_Os06g11730.1 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os06g41790.1 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.02 Archaeplastida
MA_10429182g0010 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.03 Archaeplastida
MA_1682g0010 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.02 Archaeplastida
MA_3307g0020 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.02 Archaeplastida
Mp8g04430.1 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.05 Archaeplastida
Pp3c10_3350V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Archaeplastida
Solyc04g074310.4.1 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.05 Archaeplastida
Zm00001e023856_P001 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e030837_P006 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004097 catechol oxidase activity IEP Neighborhood
MF GO:0004112 cyclic-nucleotide phosphodiesterase activity IEP Neighborhood
MF GO:0004312 fatty acid synthase activity IEP Neighborhood
MF GO:0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
MF GO:0004857 enzyme inhibitor activity IEP Neighborhood
MF GO:0005544 calcium-dependent phospholipid binding IEP Neighborhood
BP GO:0006629 lipid metabolic process IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
MF GO:0008081 phosphoric diester hydrolase activity IEP Neighborhood
MF GO:0008146 sulfotransferase activity IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
CC GO:0016469 proton-transporting two-sector ATPase complex IEP Neighborhood
CC GO:0016471 vacuolar proton-transporting V-type ATPase complex IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Neighborhood
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
BP GO:0030258 lipid modification IEP Neighborhood
BP GO:0030259 lipid glycosylation IEP Neighborhood
CC GO:0033176 proton-transporting V-type ATPase complex IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
BP GO:0044255 cellular lipid metabolic process IEP Neighborhood
CC GO:0044437 vacuolar part IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 14 71
No external refs found!