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  5. Solyc04g050540.4.1

Solyc04g050540.4.1


Description : PAP1/TAC3 cofactor of plastid-encoded RNA polymerase


Gene families : OG0004175 (Archaeplastida) Phylogenetic Tree(s): OG0004175_tree ,
OG_05_0006431 (LandPlants) Phylogenetic Tree(s): OG_05_0006431_tree ,
OG_06_0007755 (SeedPlants) Phylogenetic Tree(s): OG_06_0007755_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g050540.4.1
Cluster HCCA: Cluster_253

Target Alias Description ECC score Gene Family Method Actions
AT3G04260 PTAC3 plastid transcriptionally active 3 0.22 Archaeplastida
Cre12.g497350 No alias No description available 0.03 Archaeplastida
GSVIVT01026351001 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.23 Archaeplastida
Gb_05601 No alias PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.03 Archaeplastida
Gb_05602 No alias no hits & (original description: none) 0.04 Archaeplastida
Gb_27856 No alias PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.03 Archaeplastida
LOC_Os10g32540.1 No alias PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.15 Archaeplastida
MA_10433475g0010 No alias PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.03 Archaeplastida
MA_7597000g0010 No alias PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.1 Archaeplastida
Mp2g04680.1 No alias PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.11 Archaeplastida
Pp3c1_8170V3.1 No alias plastid transcriptionally active 3 0.13 Archaeplastida
Smo164431 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.05 Archaeplastida
Zm00001e004642_P001 No alias PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.11 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0002161 aminoacyl-tRNA editing activity IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0003747 translation release factor activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006415 translational termination IEP Neighborhood
MF GO:0008079 translation termination factor activity IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Neighborhood
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
BP GO:0022411 cellular component disassembly IEP Neighborhood
BP GO:0032984 protein-containing complex disassembly IEP Neighborhood
BP GO:0043624 cellular protein complex disassembly IEP Neighborhood
MF GO:0071949 FAD binding IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR003034 SAP_dom 534 566
No external refs found!