Solyc04g054510.4.1


Description : no hits & (original description: none)


Gene families : OG0007434 (Archaeplastida) Phylogenetic Tree(s): OG0007434_tree ,
OG_05_0008908 (LandPlants) Phylogenetic Tree(s): OG_05_0008908_tree ,
OG_06_0009293 (SeedPlants) Phylogenetic Tree(s): OG_06_0009293_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g054510.4.1
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
AT3G25940 No alias TFIIB zinc-binding protein 0.09 Archaeplastida
Cpa|evm.model.tig00021464.48 No alias No description available 0.04 Archaeplastida
Cre01.g018000 No alias No description available 0.06 Archaeplastida
Mp1g07140.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c24_7070V3.1 No alias TFIIB zinc-binding protein 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
CC GO:0031090 organelle membrane IEP Neighborhood
CC GO:0031966 mitochondrial membrane IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044445 cytosolic part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
CC GO:0090730 Las1 complex IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
CC GO:1902555 endoribonuclease complex IEP Neighborhood
CC GO:1902911 protein kinase complex IEP Neighborhood
CC GO:1905348 endonuclease complex IEP Neighborhood
CC GO:1905354 exoribonuclease complex IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001222 Znf_TFIIS 80 116
No external refs found!