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  5. Solyc04g056370.3.1

Solyc04g056370.3.1


Description : Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidopsis thaliana (sp|q2v3h0|pp322_arath : 127.0)


Gene families : OG0001465 (Archaeplastida) Phylogenetic Tree(s): OG0001465_tree ,
OG_05_0009765 (LandPlants) Phylogenetic Tree(s): OG_05_0009765_tree ,
OG_06_0007687 (SeedPlants) Phylogenetic Tree(s): OG_06_0007687_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g056370.3.1
Cluster HCCA: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
AT1G04590 No alias BEST Arabidopsis thaliana protein match is:... 0.02 Archaeplastida
GSVIVT01028826001 No alias Pentatricopeptide repeat-containing protein At4g21190... 0.05 Archaeplastida
LOC_Os01g55290.2 No alias Pentatricopeptide repeat-containing protein At4g21190... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0004797 thymidine kinase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0019136 deoxynucleoside kinase activity IEP Neighborhood
MF GO:0019205 nucleobase-containing compound kinase activity IEP Neighborhood
MF GO:0019206 nucleoside kinase activity IEP Neighborhood
BP GO:0022900 electron transport chain IEP Neighborhood
BP GO:0022904 respiratory electron transport chain IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!