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  5. Solyc04g063340.3.1

Solyc04g063340.3.1


Description : Pentatricopeptide repeat-containing protein At1g43980, mitochondrial OS=Arabidopsis thaliana (sp|q9lp03|ppr73_arath : 544.0)


Gene families : OG0014080 (Archaeplastida) Phylogenetic Tree(s): OG0014080_tree ,
OG_05_0014017 (LandPlants) Phylogenetic Tree(s): OG_05_0014017_tree ,
OG_06_0013938 (SeedPlants) Phylogenetic Tree(s): OG_06_0013938_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g063340.3.1
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AT1G43980 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
LOC_Os03g32090.1 No alias Pentatricopeptide repeat-containing protein At1g43980,... 0.02 Archaeplastida
Zm00001e030926_P001 No alias Pentatricopeptide repeat-containing protein At1g43980,... 0.17 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 145 185
IPR002885 Pentatricopeptide_repeat 241 288
IPR002885 Pentatricopeptide_repeat 215 238
IPR002885 Pentatricopeptide_repeat 444 473
IPR002885 Pentatricopeptide_repeat 346 370
IPR002885 Pentatricopeptide_repeat 480 507
IPR002885 Pentatricopeptide_repeat 516 541
IPR002885 Pentatricopeptide_repeat 415 441
No external refs found!