Solyc04g072043.1.1

Description : mRNA poly-A-tail binding factor (PABP)

Gene families : OG0000771 (Archaeplastida) Phylogenetic Tree(s): OG0000771_tree ,
OG_05_0000645 (LandPlants) Phylogenetic Tree(s): OG_05_0000645_tree ,
OG_06_0001351 (SeedPlants) Phylogenetic Tree(s): OG_06_0001351_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc04g072043.1.1
Cluster	HCCA: Cluster_137

Target	Alias	Description	ECC score	Gene Family Method
AT2G36660	PAB7	poly(A) binding protein 7	0.04	Archaeplastida
AT3G16380	PAB6	poly(A) binding protein 6	0.04	Archaeplastida
GSVIVT01013699001	No alias	Protein biosynthesis.translation initiation.mRNA...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003993	acid phosphatase activity	IEP	Neighborhood
BP	GO:0030001	metal ion transport	IEP	Neighborhood
MF	GO:0051011	microtubule minus-end binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002004	PABP_HYD	565	631
IPR000504	RRM_dom	50	119
IPR000504	RRM_dom	331	398
IPR000504	RRM_dom	228	296
IPR000504	RRM_dom	138	206

External Links

No external refs found!