Solyc04g072170.1.1


Description : Pentatricopeptide repeat-containing protein At1g34160 OS=Arabidopsis thaliana (sp|q9fx24|ppr71_arath : 684.0)


Gene families : OG0012179 (Archaeplastida) Phylogenetic Tree(s): OG0012179_tree ,
OG_05_0012109 (LandPlants) Phylogenetic Tree(s): OG_05_0012109_tree ,
OG_06_0012203 (SeedPlants) Phylogenetic Tree(s): OG_06_0012203_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g072170.1.1
Cluster HCCA: Cluster_207

Target Alias Description ECC score Gene Family Method Actions
AT1G34160 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
GSVIVT01013673001 No alias Pentatricopeptide repeat-containing protein At1g34160... 0.05 Archaeplastida
LOC_Os12g17080.1 No alias Pentatricopeptide repeat-containing protein OGR1,... 0.05 Archaeplastida
Zm00001e042519_P001 No alias Pentatricopeptide repeat-containing protein OGR1,... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0006479 protein methylation IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 342 366
IPR002885 Pentatricopeptide_repeat 239 265
IPR002885 Pentatricopeptide_repeat 140 165
IPR002885 Pentatricopeptide_repeat 69 94
IPR002885 Pentatricopeptide_repeat 270 313
IPR002885 Pentatricopeptide_repeat 166 212
IPR032867 DYW_dom 440 564
No external refs found!