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  5. Solyc04g074990.3.1

Solyc04g074990.3.1


Description : transcription factor (zf-HD)


Gene families : OG0000209 (Archaeplastida) Phylogenetic Tree(s): OG0000209_tree ,
OG_05_0000122 (LandPlants) Phylogenetic Tree(s): OG_05_0000122_tree ,
OG_06_0000088 (SeedPlants) Phylogenetic Tree(s): OG_06_0000088_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g074990.3.1
Cluster HCCA: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00261620 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.02 Archaeplastida
AMTR_s00038p00027320 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
AMTR_s00070p00154800 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.07 Archaeplastida
AMTR_s00099p00145100 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.05 Archaeplastida
AMTR_s00119p00074870 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.02 Archaeplastida
AT1G14440 AtHB31, ZHD4, HB31 homeobox protein 31 0.04 Archaeplastida
AT1G74660 MIF1 mini zinc finger 1 0.03 Archaeplastida
AT1G75240 AtHB33, ZHD5, HB33 homeobox protein 33 0.05 Archaeplastida
AT2G02540 ZHD3, HB21, ATHB21, ZFHD4 homeobox protein 21 0.05 Archaeplastida
AT3G50890 ZHD7, HB28, AtHB28 homeobox protein 28 0.05 Archaeplastida
AT5G15210 ZHD8, ATHB30, ZFHD3, HB30 homeobox protein 30 0.03 Archaeplastida
GSVIVT01000250001 No alias RNA biosynthesis.transcriptional activation.HB... 0.05 Archaeplastida
GSVIVT01012772001 No alias RNA biosynthesis.transcriptional activation.HB... 0.07 Archaeplastida
GSVIVT01018947001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
LOC_Os02g47770.1 No alias transcription factor (zf-HD) 0.03 Archaeplastida
LOC_Os08g37400.1 No alias transcription factor (zf-HD) 0.05 Archaeplastida
LOC_Os11g13930.1 No alias transcription factor (zf-HD) 0.05 Archaeplastida
MA_12356g0020 No alias transcription factor (zf-HD) 0.03 Archaeplastida
MA_144114g0010 No alias transcription factor (zf-HD) 0.05 Archaeplastida
MA_147745g0020 No alias transcription factor (zf-HD) 0.05 Archaeplastida
Pp3c1_15290V3.1 No alias homeobox protein 33 0.05 Archaeplastida
Solyc03g116070.1.1 No alias transcription factor (zf-HD) 0.05 Archaeplastida
Solyc04g014260.2.1 No alias transcription factor (zf-HD) 0.03 Archaeplastida
Zm00001e008082_P001 No alias transcription factor (zf-HD) 0.02 Archaeplastida
Zm00001e023331_P001 No alias transcription factor (zf-HD) 0.02 Archaeplastida
Zm00001e034407_P001 No alias transcription factor (zf-HD) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0035556 intracellular signal transduction IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
InterPro domains Description Start Stop
IPR006456 ZF_HD_homeobox_Cys/His_dimer 45 98
No external refs found!