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  5. Solyc04g076070.1.1

Solyc04g076070.1.1


Description : Pentatricopeptide repeat-containing protein At5g18475 OS=Arabidopsis thaliana (sp|q3e9f0|pp392_arath : 535.0)


Gene families : OG0000198 (Archaeplastida) Phylogenetic Tree(s): OG0000198_tree ,
OG_05_0000086 (LandPlants) Phylogenetic Tree(s): OG_05_0000086_tree ,
OG_06_0000170 (SeedPlants) Phylogenetic Tree(s): OG_06_0000170_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g076070.1.1
Cluster HCCA: Cluster_173

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00204830 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g39710... 0.02 Archaeplastida
AMTR_s00029p00104100 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g61870,... 0.04 Archaeplastida
AMTR_s00111p00140430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g01400,... 0.03 Archaeplastida
AT1G53330 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
AT2G06000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT3G09060 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
AT3G14580 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
AT5G46100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
GSVIVT01005273001 No alias Pentatricopeptide repeat-containing protein At1g55890,... 0.04 Archaeplastida
Gb_05553 No alias group-II intron mitochondrial splicing factor (MISF74) 0.03 Archaeplastida
Gb_12002 No alias Pentatricopeptide repeat-containing protein At3g48810... 0.03 Archaeplastida
Gb_14900 No alias Pentatricopeptide repeat-containing protein At4g20090... 0.03 Archaeplastida
Gb_21920 No alias Pentatricopeptide repeat-containing protein At1g07740,... 0.03 Archaeplastida
Gb_23263 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.04 Archaeplastida
LOC_Os01g57630.2 No alias Pentatricopeptide repeat-containing protein At1g55890,... 0.05 Archaeplastida
LOC_Os01g63400.1 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.03 Archaeplastida
LOC_Os05g04160.1 No alias Pentatricopeptide repeat-containing protein At3g48810... 0.04 Archaeplastida
LOC_Os08g39050.1 No alias Pentatricopeptide repeat-containing protein At1g80150,... 0.04 Archaeplastida
MA_125741g0010 No alias Pentatricopeptide repeat-containing protein At5g16420,... 0.03 Archaeplastida
MA_137206g0010 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.03 Archaeplastida
MA_138370g0010 No alias Pentatricopeptide repeat-containing protein At1g80150,... 0.03 Archaeplastida
MA_525159g0010 No alias Pentatricopeptide repeat-containing protein At1g07740,... 0.04 Archaeplastida
MA_57592g0010 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.03 Archaeplastida
MA_71816g0020 No alias Pentatricopeptide repeat-containing protein At3g14580,... 0.04 Archaeplastida
MA_742945g0010 No alias Pentatricopeptide repeat-containing protein At5g16420,... 0.03 Archaeplastida
MA_80720g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_83414g0010 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.04 Archaeplastida
MA_90507g0010 No alias Pentatricopeptide repeat-containing protein At2g06000... 0.03 Archaeplastida
Mp1g21650.1 No alias Pentatricopeptide repeat-containing protein At3g06920... 0.02 Archaeplastida
Mp3g05190.1 No alias Pentatricopeptide repeat-containing protein At1g62930,... 0.02 Archaeplastida
Smo78295 No alias No description available 0.04 Archaeplastida
Solyc09g061760.1.1 No alias Pentatricopeptide repeat-containing protein At2g17525,... 0.04 Archaeplastida
Zm00001e003447_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e028732_P001 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
CC GO:0031248 protein acetyltransferase complex IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
CC GO:0070461 SAGA-type complex IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
CC GO:1902493 acetyltransferase complex IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 130 152
IPR002885 Pentatricopeptide_repeat 382 408
IPR002885 Pentatricopeptide_repeat 484 508
IPR002885 Pentatricopeptide_repeat 414 442
IPR002885 Pentatricopeptide_repeat 196 227
IPR002885 Pentatricopeptide_repeat 234 284
IPR002885 Pentatricopeptide_repeat 305 354
No external refs found!