1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc04g076210.3.1

Solyc04g076210.3.1


Description : deubiquitinase (UBP15-21)


Gene families : OG0000242 (Archaeplastida) Phylogenetic Tree(s): OG0000242_tree ,
OG_05_0000881 (LandPlants) Phylogenetic Tree(s): OG_05_0000881_tree ,
OG_06_0001276 (SeedPlants) Phylogenetic Tree(s): OG_06_0001276_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g076210.3.1
Cluster HCCA: Cluster_264

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00135p00021060 evm_27.TU.AmTr_v1... Protein degradation.peptidase families.cysteine-type... 0.03 Archaeplastida
AT1G17110 UBP15 ubiquitin-specific protease 15 0.03 Archaeplastida
AT3G14400 UBP25 ubiquitin-specific protease 25 0.03 Archaeplastida
AT4G24560 UBP16 ubiquitin-specific protease 16 0.03 Archaeplastida
Cpa|evm.model.tig00000808.46 No alias Protein degradation.peptidase families.cysteine-type... 0.02 Archaeplastida
GSVIVT01033166001 No alias Protein degradation.peptidase families.cysteine-type... 0.03 Archaeplastida
LOC_Os02g46650.1 No alias Ubiquitin carboxyl-terminal hydrolase 21 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os05g43480.1 No alias deubiquitinase (UBP25) 0.04 Archaeplastida
LOC_Os06g44380.1 No alias deubiquitinase (UBP15-21) 0.08 Archaeplastida
LOC_Os09g28940.1 No alias deubiquitinase (UBP15-21) 0.04 Archaeplastida
MA_10429414g0020 No alias deubiquitinase (UBP15-21) 0.02 Archaeplastida
MA_53569g0010 No alias deubiquitinase (UBP23) 0.03 Archaeplastida
Mp2g05560.1 No alias deubiquitinase (UBP15-21) 0.07 Archaeplastida
Pp3c6_5860V3.1 No alias ubiquitin-specific protease 18 0.02 Archaeplastida
Zm00001e014332_P001 No alias deubiquitinase (UBP15-21) 0.02 Archaeplastida
Zm00001e022516_P001 No alias deubiquitinase (UBP15-21) 0.07 Archaeplastida
Zm00001e024878_P003 No alias deubiquitinase (UBP15-21) 0.03 Archaeplastida
Zm00001e027381_P003 No alias deubiquitinase (UBP25) 0.03 Archaeplastida
Zm00001e030428_P001 No alias deubiquitinase (UBP15-21) 0.03 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0016579 protein deubiquitination IEA Interproscan
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0004402 histone acetyltransferase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Neighborhood
MF GO:0004525 ribonuclease III activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Neighborhood
MF GO:0005244 voltage-gated ion channel activity IEP Neighborhood
MF GO:0005247 voltage-gated chloride channel activity IEP Neighborhood
MF GO:0005253 anion channel activity IEP Neighborhood
MF GO:0005254 chloride channel activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006473 protein acetylation IEP Neighborhood
BP GO:0006475 internal protein amino acid acetylation IEP Neighborhood
BP GO:0006821 chloride transport IEP Neighborhood
CC GO:0008023 transcription elongation factor complex IEP Neighborhood
MF GO:0008308 voltage-gated anion channel activity IEP Neighborhood
MF GO:0008509 anion transmembrane transporter activity IEP Neighborhood
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Neighborhood
MF GO:0015108 chloride transmembrane transporter activity IEP Neighborhood
BP GO:0015698 inorganic anion transport IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016573 histone acetylation IEP Neighborhood
CC GO:0016593 Cdc73/Paf1 complex IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0018393 internal peptidyl-lysine acetylation IEP Neighborhood
BP GO:0018394 peptidyl-lysine acetylation IEP Neighborhood
MF GO:0022832 voltage-gated channel activity IEP Neighborhood
MF GO:0022836 gated channel activity IEP Neighborhood
MF GO:0022839 ion gated channel activity IEP Neighborhood
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Neighborhood
MF GO:0034212 peptide N-acetyltransferase activity IEP Neighborhood
BP GO:0043543 protein acylation IEP Neighborhood
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
InterPro domains Description Start Stop
IPR001394 Peptidase_C19_UCH 575 877
IPR002893 Znf_MYND 55 92
No external refs found!