1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc04g076900.2.1

Solyc04g076900.2.1


Description : component Symplekin/Pta1 of Cleavage and Polyadenylation Specificity Factor (CPSF) complex


Gene families : OG0001799 (Archaeplastida) Phylogenetic Tree(s): OG0001799_tree ,
OG_05_0013996 (LandPlants) Phylogenetic Tree(s): OG_05_0013996_tree ,
OG_06_0013913 (SeedPlants) Phylogenetic Tree(s): OG_06_0013913_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g076900.2.1
Cluster HCCA: Cluster_182

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00088050 evm_27.TU.AmTr_v1... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.07 Archaeplastida
AT1G27595 No alias CONTAINS InterPro DOMAIN/s: Symplekin tight junction... 0.09 Archaeplastida
AT5G01400 ESP4 HEAT repeat-containing protein 0.09 Archaeplastida
GSVIVT01011157001 No alias RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.09 Archaeplastida
Gb_23976 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.04 Archaeplastida
Gb_24672 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.03 Archaeplastida
LOC_Os01g49940.1 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.06 Archaeplastida
LOC_Os07g49320.1 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.06 Archaeplastida
MA_10426054g0010 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.04 Archaeplastida
MA_10426054g0020 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.04 Archaeplastida
MA_10432378g0010 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.05 Archaeplastida
MA_8459784g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Mp6g03410.1 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.02 Archaeplastida
Pp3c2_10640V3.1 No alias HEAT repeat-containing protein 0.05 Archaeplastida
Smo442688 No alias RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.05 Archaeplastida
Zm00001e020082_P004 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.14 Archaeplastida
Zm00001e035946_P001 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000723 telomere maintenance IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0008417 fucosyltransferase activity IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
CC GO:0016459 myosin complex IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Neighborhood
CC GO:0030132 clathrin coat of coated pit IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
BP GO:0032200 telomere organization IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0042592 homeostatic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
MF GO:0060090 molecular adaptor activity IEP Neighborhood
BP GO:0060249 anatomical structure homeostasis IEP Neighborhood
MF GO:0061630 ubiquitin protein ligase activity IEP Neighborhood
MF GO:0061659 ubiquitin-like protein ligase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR032460 Symplekin/Pta1_N 97 245
No external refs found!