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  5. Solyc04g078780.3.1

Solyc04g078780.3.1


Description : pre-40S ribosomal subunit assembly factor (RID3)


Gene families : OG0002482 (Archaeplastida) Phylogenetic Tree(s): OG0002482_tree ,
OG_05_0002778 (LandPlants) Phylogenetic Tree(s): OG_05_0002778_tree ,
OG_06_0002789 (SeedPlants) Phylogenetic Tree(s): OG_06_0002789_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g078780.3.1

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01009478001 No alias Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana 0.03 Archaeplastida
Zm00001e032455_P007 No alias pre-40S ribosomal subunit assembly factor (RID3) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004017 adenylate kinase activity IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Neighborhood
MF GO:0019205 nucleobase-containing compound kinase activity IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0050145 nucleoside monophosphate kinase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 171 206
IPR001680 WD40_repeat 266 298
IPR001680 WD40_repeat 113 151
No external refs found!