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  5. Solyc04g078860.4.1

Solyc04g078860.4.1


Description : ligand-gated cation channel (GLR)


Gene families : OG0000085 (Archaeplastida) Phylogenetic Tree(s): OG0000085_tree ,
OG_05_0108703 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0086502 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g078860.4.1
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00140120 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.03 Archaeplastida
AMTR_s00019p00180760 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.02 Archaeplastida
AMTR_s00019p00182190 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.04 Archaeplastida
AMTR_s00019p00182440 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.04 Archaeplastida
AMTR_s00019p00182630 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.06 Archaeplastida
AMTR_s00055p00227100 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.02 Archaeplastida
AT2G24720 GLR2.2, ATGLR2.2 glutamate receptor 2.2 0.08 Archaeplastida
AT2G29100 ATGLR2.9, GLR2.9 glutamate receptor 2.9 0.09 Archaeplastida
AT2G29110 GLR2.8, ATGLR2.8 glutamate receptor 2.8 0.03 Archaeplastida
AT2G29120 GLR2.7, ATGLR2.7 glutamate receptor 2.7 0.12 Archaeplastida
AT3G04110 ATGLR1.1, GLR1.1, GLR1 glutamate receptor 1.1 0.03 Archaeplastida
AT3G07520 GLR1.4, ATGLR1.4 glutamate receptor 1.4 0.03 Archaeplastida
AT5G11180 ATGLR2.6, GLR2.6 glutamate receptor 2.6 0.06 Archaeplastida
AT5G11210 GLR2.5, ATGLR2.5 glutamate receptor 2.5 0.05 Archaeplastida
AT5G27100 GLR2.1, ATGLR2.1 glutamate receptor 2.1 0.09 Archaeplastida
AT5G48400 ATGLR1.2, GLR1.2 Glutamate receptor family protein 0.07 Archaeplastida
AT5G48410 ATGLR1.3, GLR1.3 glutamate receptor 1.3 0.03 Archaeplastida
Cpa|evm.model.tig00021569.4 No alias Glutamate receptor 3.1 OS=Oryza sativa subsp. japonica 0.01 Archaeplastida
GSVIVT01014251001 No alias Solute transport.channels.GLR ligand-gated cation channel 0.04 Archaeplastida
GSVIVT01022297001 No alias Solute transport.channels.GLR ligand-gated cation channel 0.02 Archaeplastida
GSVIVT01029195001 No alias Solute transport.channels.GLR ligand-gated cation channel 0.02 Archaeplastida
GSVIVT01030602001 No alias Solute transport.channels.GLR ligand-gated cation channel 0.03 Archaeplastida
GSVIVT01033121001 No alias Solute transport.channels.GLR ligand-gated cation channel 0.04 Archaeplastida
GSVIVT01033137001 No alias Solute transport.channels.GLR ligand-gated cation channel 0.1 Archaeplastida
GSVIVT01033142001 No alias Solute transport.channels.GLR ligand-gated cation channel 0.06 Archaeplastida
Gb_06329 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
Gb_16131 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
Gb_20613 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
Gb_26917 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
Gb_27767 No alias ligand-gated cation channel (GLR) 0.04 Archaeplastida
Gb_28362 No alias ligand-gated cation channel (GLR) 0.02 Archaeplastida
LOC_Os02g54640.1 No alias ligand-gated cation channel (GLR) 0.02 Archaeplastida
LOC_Os06g09130.1 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
MA_10428186g0010 No alias ligand-gated cation channel (GLR) 0.04 Archaeplastida
MA_10434521g0010 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
MA_6222576g0010 No alias ligand-gated cation channel (GLR) 0.05 Archaeplastida
Smo166047 No alias Solute transport.channels.GLR ligand-gated cation channel 0.02 Archaeplastida
Solyc06g063180.3.1 No alias ligand-gated cation channel (GLR) 0.04 Archaeplastida
Solyc06g063190.3.1 No alias ligand-gated cation channel (GLR) 0.05 Archaeplastida
Solyc06g063210.3.1 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
Zm00001e013023_P001 No alias ligand-gated cation channel (GLR) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0015276 ligand-gated ion channel activity IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0001871 pattern binding IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
MF GO:0008131 primary amine oxidase activity IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
BP GO:0009308 amine metabolic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010215 cellulose microfibril organization IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Neighborhood
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0030198 extracellular matrix organization IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
CC GO:0031225 anchored component of membrane IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0043062 extracellular structure organization IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
MF GO:0048038 quinone binding IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001828 ANF_lig-bd_rcpt 66 408
IPR001320 Iontro_rcpt 806 816
IPR001638 Solute-binding_3/MltF_N 497 805
No external refs found!