1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc04g078930.4.1

Solyc04g078930.4.1


Description : alpha amylase


Gene families : OG0000584 (Archaeplastida) Phylogenetic Tree(s): OG0000584_tree ,
OG_05_0001382 (LandPlants) Phylogenetic Tree(s): OG_05_0001382_tree ,
OG_06_0002339 (SeedPlants) Phylogenetic Tree(s): OG_06_0002339_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g078930.4.1
Cluster HCCA: Cluster_193

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00183740 evm_27.TU.AmTr_v1... Carbohydrate metabolism.starch... 0.05 Archaeplastida
Gb_30448 No alias alpha amylase 0.02 Archaeplastida
LOC_Os06g49970.2 No alias alpha amylase 0.04 Archaeplastida
MA_217935g0010 No alias alpha amylase 0.06 Archaeplastida
MA_564355g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_9120657g0010 No alias Probable alpha-amylase 2 OS=Arabidopsis thaliana... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0004556 alpha-amylase activity IEA Interproscan
MF GO:0005509 calcium ion binding IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
MF GO:0004497 monooxygenase activity IEP Neighborhood
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Neighborhood
MF GO:0004857 enzyme inhibitor activity IEP Neighborhood
MF GO:0004866 endopeptidase inhibitor activity IEP Neighborhood
MF GO:0004867 serine-type endopeptidase inhibitor activity IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
MF GO:0030414 peptidase inhibitor activity IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0050660 flavin adenine dinucleotide binding IEP Neighborhood
MF GO:0050661 NADP binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
MF GO:0061134 peptidase regulator activity IEP Neighborhood
MF GO:0061135 endopeptidase regulator activity IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
InterPro domains Description Start Stop
IPR012850 A-amylase_bs_C 346 404
IPR006047 Glyco_hydro_13_cat_dom 34 190
No external refs found!