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  5. Solyc04g079150.1.1

Solyc04g079150.1.1


Description : Pentatricopeptide repeat-containing protein At1g73400, mitochondrial OS=Arabidopsis thaliana (sp|q9fx35|pp117_arath : 650.0)


Gene families : OG0010085 (Archaeplastida) Phylogenetic Tree(s): OG0010085_tree ,
OG_05_0010116 (LandPlants) Phylogenetic Tree(s): OG_05_0010116_tree ,
OG_06_0008658 (SeedPlants) Phylogenetic Tree(s): OG_06_0008658_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g079150.1.1
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00142p00073110 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g73400,... 0.05 Archaeplastida
AT1G73400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
LOC_Os02g52220.1 No alias Pentatricopeptide repeat-containing protein At1g73400,... 0.03 Archaeplastida
Zm00001e015907_P001 No alias Pentatricopeptide repeat-containing protein At1g73400,... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 398 457
IPR002885 Pentatricopeptide_repeat 233 281
IPR002885 Pentatricopeptide_repeat 302 352
IPR002885 Pentatricopeptide_repeat 484 512
No external refs found!