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  4. Sequence
  5. Solyc04g080490.4.1

Solyc04g080490.4.1


Description : transcription factor (zf-HD)


Gene families : OG0000209 (Archaeplastida) Phylogenetic Tree(s): OG0000209_tree ,
OG_05_0000122 (LandPlants) Phylogenetic Tree(s): OG_05_0000122_tree ,
OG_06_0086514 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g080490.4.1
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00255340 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
AMTR_s00024p00085480 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
AMTR_s00038p00027320 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.05 Archaeplastida
AMTR_s00070p00154800 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.07 Archaeplastida
AMTR_s00099p00145100 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.05 Archaeplastida
AT1G14440 AtHB31, ZHD4, HB31 homeobox protein 31 0.07 Archaeplastida
AT1G75240 AtHB33, ZHD5, HB33 homeobox protein 33 0.07 Archaeplastida
AT2G02540 ZHD3, HB21, ATHB21, ZFHD4 homeobox protein 21 0.07 Archaeplastida
AT3G28917 MIF2 mini zinc finger 2 0.03 Archaeplastida
AT3G50890 ZHD7, HB28, AtHB28 homeobox protein 28 0.08 Archaeplastida
AT5G15210 ZHD8, ATHB30, ZFHD3, HB30 homeobox protein 30 0.07 Archaeplastida
AT5G65410 ZHD1, ZFHD2, HB25, ATHB25 homeobox protein 25 0.04 Archaeplastida
GSVIVT01000250001 No alias RNA biosynthesis.transcriptional activation.HB... 0.06 Archaeplastida
GSVIVT01009128001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
GSVIVT01018947001 No alias RNA biosynthesis.transcriptional activation.HB... 0.06 Archaeplastida
Gb_37393 No alias transcription factor (zf-HD) 0.04 Archaeplastida
LOC_Os02g47770.1 No alias transcription factor (zf-HD) 0.07 Archaeplastida
LOC_Os04g35500.1 No alias transcription factor (zf-HD) 0.05 Archaeplastida
LOC_Os08g34010.1 No alias transcription factor (zf-HD) 0.03 Archaeplastida
LOC_Os08g37400.1 No alias transcription factor (zf-HD) 0.04 Archaeplastida
LOC_Os09g24820.1 No alias transcription factor (zf-HD) 0.05 Archaeplastida
LOC_Os09g29130.1 No alias transcription factor (zf-HD) 0.04 Archaeplastida
LOC_Os11g13930.1 No alias transcription factor (zf-HD) 0.06 Archaeplastida
LOC_Os12g10630.1 No alias transcription factor (zf-HD) 0.05 Archaeplastida
MA_101972g0010 No alias transcription factor (zf-HD) 0.04 Archaeplastida
MA_10427932g0010 No alias transcription factor (zf-HD) 0.03 Archaeplastida
MA_144114g0010 No alias transcription factor (zf-HD) 0.02 Archaeplastida
MA_147745g0020 No alias transcription factor (zf-HD) 0.02 Archaeplastida
MA_19630g0020 No alias transcription factor (zf-HD) 0.03 Archaeplastida
MA_19630g0030 No alias transcription factor (zf-HD) 0.02 Archaeplastida
Mp8g08190.1 No alias transcription factor (zf-HD) 0.02 Archaeplastida
Pp3c19_20410V3.1 No alias homeobox protein 21 0.02 Archaeplastida
Pp3c1_15290V3.1 No alias homeobox protein 33 0.06 Archaeplastida
Pp3c2_21160V3.1 No alias homeobox protein 33 0.03 Archaeplastida
Pp3c7_15000V3.1 No alias homeobox protein 33 0.03 Archaeplastida
Zm00001e008082_P001 No alias transcription factor (zf-HD) 0.07 Archaeplastida
Zm00001e009830_P001 No alias transcription factor (zf-HD) 0.09 Archaeplastida
Zm00001e015590_P001 No alias transcription factor (zf-HD) 0.06 Archaeplastida
Zm00001e018364_P001 No alias transcription factor (zf-HD) 0.1 Archaeplastida
Zm00001e021292_P003 No alias transcription factor (zf-HD) 0.05 Archaeplastida
Zm00001e022486_P001 No alias transcription factor (zf-HD) 0.1 Archaeplastida
Zm00001e023331_P001 No alias transcription factor (zf-HD) 0.07 Archaeplastida
Zm00001e034119_P001 No alias transcription factor (zf-HD) 0.05 Archaeplastida
Zm00001e034407_P001 No alias transcription factor (zf-HD) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
InterPro domains Description Start Stop
IPR006456 ZF_HD_homeobox_Cys/His_dimer 59 110
No external refs found!