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  5. AMTR_s00025p00112530

AMTR_s00025p00112530 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00025.101

Description : RNA processing.RNA splicing.U6-associated LSm accessory ribonucleoprotein complex.LSm2 component


Gene families : OG0003406 (Archaeplastida) Phylogenetic Tree(s): OG0003406_tree ,
OG_05_0008218 (LandPlants) Phylogenetic Tree(s): OG_05_0008218_tree ,
OG_06_0010664 (SeedPlants) Phylogenetic Tree(s): OG_06_0010664_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00025p00112530
Cluster HCCA: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
Gb_08277 No alias component LSm2 of U6-associated LSm accessory... 0.06 Archaeplastida
Gb_13034 No alias component LSm2 of U6-associated LSm accessory... 0.02 Archaeplastida
Pp3c2_19710V3.1 No alias Small nuclear ribonucleoprotein family protein 0.02 Archaeplastida
Smo232056 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003954 NADH dehydrogenase activity IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Neighborhood
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 7 71
No external refs found!