Solyc04g081240.2.1


Description : transcription factor (ARF)


Gene families : OG0000080 (Archaeplastida) Phylogenetic Tree(s): OG0000080_tree ,
OG_05_0000516 (LandPlants) Phylogenetic Tree(s): OG_05_0000516_tree ,
OG_06_0000730 (SeedPlants) Phylogenetic Tree(s): OG_06_0000730_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g081240.2.1
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
AT1G19850 MP, IAA24, ARF5 Transcriptional factor B3 family protein /... 0.04 Archaeplastida
AT2G33860 ARF3, ETT Transcriptional factor B3 family protein /... 0.04 Archaeplastida
GSVIVT01016266001 No alias Auxin response factor 18 OS=Oryza sativa subsp. japonica 0.04 Archaeplastida
LOC_Os01g48060.1 No alias transcription factor (ARF) 0.03 Archaeplastida
LOC_Os04g36054.1 No alias transcription factor (ARF) 0.04 Archaeplastida
LOC_Os04g56850.1 No alias transcription factor (ARF) 0.03 Archaeplastida
LOC_Os12g29520.1 No alias transcription factor (ARF) 0.04 Archaeplastida
MA_85955g0020 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e006640_P002 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e013061_P001 No alias transcription factor (ARF) 0.05 Archaeplastida
Zm00001e021527_P006 No alias transcription factor (ARF) 0.06 Archaeplastida
Zm00001e023038_P001 No alias transcription factor (ARF) 0.04 Archaeplastida
Zm00001e028396_P001 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e041866_P001 No alias transcription factor (ARF) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
BP GO:0009725 response to hormone IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004525 ribonuclease III activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
InterPro domains Description Start Stop
IPR033389 AUX/IAA_dom 810 903
IPR010525 Auxin_resp 273 356
IPR003340 B3_DNA-bd 147 248
No external refs found!