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  5. Solyc04g082470.3.1

Solyc04g082470.3.1


Description : LWD circadian clock activation factor


Gene families : OG0001679 (Archaeplastida) Phylogenetic Tree(s): OG0001679_tree ,
OG_05_0001586 (LandPlants) Phylogenetic Tree(s): OG_05_0001586_tree ,
OG_06_0001588 (SeedPlants) Phylogenetic Tree(s): OG_06_0001588_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g082470.3.1
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01032940001 No alias WD repeat-containing protein LWD1 OS=Arabidopsis thaliana 0.03 Archaeplastida
LOC_Os02g32430.1 No alias WD repeat-containing protein LWD1 OS=Arabidopsis... 0.03 Archaeplastida
Pp3c19_21960V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Archaeplastida
Zm00001e014684_P001 No alias WD repeat-containing protein LWD1 OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e015450_P001 No alias Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0031369 translation initiation factor binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 264 297
IPR001680 WD40_repeat 175 206
No external refs found!