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  4. Sequence
  5. AMTR_s00025p00129710

AMTR_s00025p00129710 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00025.127

No description available


Gene families : OG0000428 (Archaeplastida) Phylogenetic Tree(s): OG0000428_tree ,
OG_05_0000219 (LandPlants) Phylogenetic Tree(s): OG_05_0000219_tree ,
OG_06_0000090 (SeedPlants) Phylogenetic Tree(s): OG_06_0000090_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00025p00129710

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00144390 evm_27.TU.AmTr_v1... No description available 0.01 Archaeplastida
AMTR_s00003p00223750 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AMTR_s00007p00155890 evm_27.TU.AmTr_v1... Protein MAIN-LIKE 2 OS=Arabidopsis thaliana 0.05 Archaeplastida
AMTR_s00010p00138560 evm_27.TU.AmTr_v1... Protein MAIN-LIKE 2 OS=Arabidopsis thaliana 0.11 Archaeplastida
AMTR_s00010p00258360 evm_27.TU.AmTr_v1... Protein MAIN-LIKE 1 OS=Arabidopsis thaliana 0.14 Archaeplastida
AMTR_s00021p00029340 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AMTR_s00021p00179460 evm_27.TU.AmTr_v1... Protein MAIN-LIKE 2 OS=Arabidopsis thaliana 0.09 Archaeplastida
AMTR_s00023p00214570 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AMTR_s00024p00112030 evm_27.TU.AmTr_v1... Protein MAIN-LIKE 2 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00026p00168780 evm_27.TU.AmTr_v1... Protein MAIN-LIKE 2 OS=Arabidopsis thaliana 0.02 Archaeplastida
AMTR_s00038p00069390 evm_27.TU.AmTr_v1... Protein MAIN-LIKE 2 OS=Arabidopsis thaliana 0.15 Archaeplastida
AMTR_s00043p00127200 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AMTR_s00045p00056700 evm_27.TU.AmTr_v1... Protein MAIN-LIKE 2 OS=Arabidopsis thaliana 0.05 Archaeplastida
AMTR_s00055p00193740 evm_27.TU.AmTr_v1... No description available 0.01 Archaeplastida
AMTR_s00057p00196440 evm_27.TU.AmTr_v1... No description available 0.01 Archaeplastida
AMTR_s00060p00126750 evm_27.TU.AmTr_v1... No description available 0.08 Archaeplastida
AMTR_s00070p00025850 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AMTR_s00072p00066840 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AMTR_s00093p00112850 evm_27.TU.AmTr_v1... No description available 0.01 Archaeplastida
AMTR_s00095p00050650 evm_27.TU.AmTr_v1... No description available 0.01 Archaeplastida
AMTR_s00106p00111260 evm_27.TU.AmTr_v1... No description available 0.01 Archaeplastida
AMTR_s00107p00031440 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AMTR_s00108p00146750 evm_27.TU.AmTr_v1... No description available 0.2 Archaeplastida
AMTR_s00137p00056870 evm_27.TU.AmTr_v1... No description available 0.14 Archaeplastida
AMTR_s00168p00037870 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AMTR_s00200p00028910 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR019557 AminoTfrase-like_pln_mobile 1 114
No external refs found!