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  5. Solyc05g004000.1.1

Solyc05g004000.1.1


Description : transcription factor (RAV/NGATHA)


Gene families : OG0000363 (Archaeplastida) Phylogenetic Tree(s): OG0000363_tree ,
OG_05_0000191 (LandPlants) Phylogenetic Tree(s): OG_05_0000191_tree ,
OG_06_0000986 (SeedPlants) Phylogenetic Tree(s): OG_06_0000986_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g004000.1.1
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
AT1G68840 EDF2, AtRAV2,... related to ABI3/VP1 2 0.03 Archaeplastida
AT2G36080 No alias AP2/B3-like transcriptional factor family protein 0.02 Archaeplastida
GSVIVT01033902001 No alias RNA biosynthesis.transcriptional activation.B3... 0.04 Archaeplastida
GSVIVT01036447001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.04 Archaeplastida
LOC_Os01g04800.1 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 Archaeplastida
LOC_Os01g49830.1 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 Archaeplastida
LOC_Os05g47650.1 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 Archaeplastida
LOC_Os11g05740.1 No alias transcription factor (RAV/NGATHA) 0.03 Archaeplastida
LOC_Os12g06080.1 No alias transcription factor (RAV/NGATHA) 0.02 Archaeplastida
MA_10436315g0010 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 Archaeplastida
MA_18923g0010 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 Archaeplastida
MA_246350g0010 No alias transcription factor (RAV/NGATHA) 0.03 Archaeplastida
MA_3834g0010 No alias transcription factor (RAV/NGATHA) 0.02 Archaeplastida
MA_953813g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c1_16700V3.1 No alias related to ABI3/VP1 1 0.03 Archaeplastida
Pp3c2_23660V3.1 No alias AP2/B3 transcription factor family protein 0.04 Archaeplastida
Zm00001e000156_P001 No alias transcription factor (RAV/NGATHA) 0.01 Archaeplastida
Zm00001e007152_P001 No alias transcription factor (RAV/NGATHA) 0.01 Archaeplastida
Zm00001e024165_P001 No alias transcription factor (RAV/NGATHA) 0.03 Archaeplastida
Zm00001e041372_P001 No alias transcription factor (RAV/NGATHA) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
CC GO:0005849 mRNA cleavage factor complex IEP Neighborhood
BP GO:0006378 mRNA polyadenylation IEP Neighborhood
BP GO:0009606 tropism IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0009733 response to auxin IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
BP GO:0010274 hydrotropism IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016846 carbon-sulfur lyase activity IEP Neighborhood
MF GO:0019842 vitamin binding IEP Neighborhood
MF GO:0030170 pyridoxal phosphate binding IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0031124 mRNA 3'-end processing IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
MF GO:0070279 vitamin B6 binding IEP Neighborhood
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 50 154
No external refs found!