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  5. Solyc05g005170.4.1

Solyc05g005170.4.1


Description : Polygalacturonase At1g48100 OS=Arabidopsis thaliana (sp|q949z1|pglr4_arath : 336.0) & Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase(50.3.2 : 208.2)


Gene families : OG0000096 (Archaeplastida) Phylogenetic Tree(s): OG0000096_tree ,
OG_05_0000636 (LandPlants) Phylogenetic Tree(s): OG_05_0000636_tree ,
OG_06_0001748 (SeedPlants) Phylogenetic Tree(s): OG_06_0001748_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g005170.4.1
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00103p00121270 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and... 0.03 Archaeplastida
LOC_Os01g43490.1 No alias Polygalacturonase OS=Prunus persica... 0.03 Archaeplastida
LOC_Os07g10740.1 No alias Polygalacturonase OS=Actinidia deliciosa... 0.04 Archaeplastida
MA_285723g0010 No alias Polygalacturonase OS=Persea americana... 0.06 Archaeplastida
Solyc04g015530.3.1 No alias polygalacturonase (QRT2) 0.04 Archaeplastida
Solyc12g019180.2.1 No alias Polygalacturonase OS=Prunus persica... 0.03 Archaeplastida
Zm00001e006092_P001 No alias polygalacturonase (QRT2) 0.04 Archaeplastida
Zm00001e006097_P001 No alias polygalacturonase (QRT2) 0.03 Archaeplastida
Zm00001e011814_P002 No alias Polygalacturonase OS=Actinidia deliciosa... 0.03 Archaeplastida
Zm00001e013553_P001 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e032294_P001 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0009605 response to external stimulus IEP Neighborhood
BP GO:0009606 tropism IEP Neighborhood
BP GO:0010274 hydrotropism IEP Neighborhood
MF GO:0019842 vitamin binding IEP Neighborhood
MF GO:0030170 pyridoxal phosphate binding IEP Neighborhood
MF GO:0070279 vitamin B6 binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 242 460
IPR000743 Glyco_hydro_28 124 202
No external refs found!