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  5. Solyc05g005440.3.1

Solyc05g005440.3.1


Description : component NF-YB of NF-Y transcription factor complex


Gene families : OG0000142 (Archaeplastida) Phylogenetic Tree(s): OG0000142_tree ,
OG_05_0014805 (LandPlants) Phylogenetic Tree(s): OG_05_0014805_tree ,
OG_06_0011154 (SeedPlants) Phylogenetic Tree(s): OG_06_0011154_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g005440.3.1
Cluster HCCA: Cluster_192

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00202310 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.NF-Y... 0.02 Archaeplastida
AT5G47670 NF-YB6, L1L nuclear factor Y, subunit B6 0.07 Archaeplastida
GSVIVT01002895001 No alias RNA biosynthesis.transcriptional activation.NF-Y... 0.07 Archaeplastida
GSVIVT01014690001 No alias RNA biosynthesis.transcriptional activation.NF-Y... 0.06 Archaeplastida
Gb_00064 No alias component NF-YB of NF-Y transcription factor complex 0.03 Archaeplastida
Gb_40846 No alias component NF-YB of NF-Y transcription factor complex 0.02 Archaeplastida
LOC_Os07g41580.1 No alias component NF-YB of NF-Y transcription factor complex 0.03 Archaeplastida
Pp3c9_14800V3.1 No alias nuclear factor Y, subunit B3 0.02 Archaeplastida
Zm00001e015699_P001 No alias component NF-YB of NF-Y transcription factor complex 0.03 Archaeplastida
Zm00001e021676_P001 No alias component NF-YB of NF-Y transcription factor complex 0.04 Archaeplastida
Zm00001e027268_P001 No alias component NF-YB of NF-Y transcription factor complex 0.03 Archaeplastida
Zm00001e028797_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e031850_P002 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
CC GO:0005811 lipid droplet IEP Neighborhood
CC GO:0012511 monolayer-surrounded lipid storage body IEP Neighborhood
CC GO:0031011 Ino80 complex IEP Neighborhood
CC GO:0033202 DNA helicase complex IEP Neighborhood
CC GO:0044454 nuclear chromosome part IEP Neighborhood
CC GO:0070603 SWI/SNF superfamily-type complex IEP Neighborhood
CC GO:0097346 INO80-type complex IEP Neighborhood
CC GO:1904949 ATPase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR003958 CBFA_NFYB_domain 64 128
No external refs found!