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  5. Solyc05g007870.3.1

Solyc05g007870.3.1


Description : transcription factor (MYB)


Gene families : OG0000002 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000116 (LandPlants) Phylogenetic Tree(s): OG_05_0000116_tree ,
OG_06_0000572 (SeedPlants) Phylogenetic Tree(s): OG_06_0000572_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g007870.3.1
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00267240 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
AMTR_s00010p00252990 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
AMTR_s00010p00264600 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.05 Archaeplastida
AMTR_s00030p00146410 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.06 Archaeplastida
AMTR_s00036p00107460 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
AMTR_s00045p00146180 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
AMTR_s01267p00006490 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
AT1G14350 AtMYB124, MYB124, FLP Duplicated homeodomain-like superfamily protein 0.06 Archaeplastida
AT1G26780 AtMYB117, LOF1, MYB117 myb domain protein 117 0.07 Archaeplastida
AT1G74430 ATMYBCP66, MYB95, ATMYB95 myb domain protein 95 0.07 Archaeplastida
AT3G01140 MYB106, NOK, AtMYB106 myb domain protein 106 0.05 Archaeplastida
AT3G49690 MYB84, RAX3, ATMYB84 myb domain protein 84 0.03 Archaeplastida
AT3G61250 AtMYB17, MYB17 myb domain protein 17 0.1 Archaeplastida
AT4G09460 MYB6, AtMYB6 myb domain protein 6 0.03 Archaeplastida
AT5G16600 MYB43, AtMYB43 myb domain protein 43 0.04 Archaeplastida
AT5G40350 MYB24, AtMYB24 myb domain protein 24 0.03 Archaeplastida
Cre02.g108350 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
Cre16.g686250 No alias No description available 0.02 Archaeplastida
GSVIVT01004851001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
GSVIVT01008401001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01011447001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
GSVIVT01015575001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01017716001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
GSVIVT01019967001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
GSVIVT01026868001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.06 Archaeplastida
GSVIVT01035461001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01035462001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
GSVIVT01035463001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.07 Archaeplastida
Gb_03400 No alias transcription factor (MYB) 0.03 Archaeplastida
Gb_03994 No alias transcription factor (MYB) 0.02 Archaeplastida
Gb_29789 No alias transcription factor (MYB) 0.02 Archaeplastida
Gb_29933 No alias transcription factor (MYB) 0.04 Archaeplastida
Gb_32143 No alias transcription factor (MYB) 0.05 Archaeplastida
Gb_34086 No alias transcription factor (MYB) 0.04 Archaeplastida
Gb_39081 No alias transcription factor (MYB) 0.03 Archaeplastida
Gb_39852 No alias transcription factor (MYB) 0.03 Archaeplastida
LOC_Os01g03720.1 No alias transcription factor (MYB) 0.02 Archaeplastida
LOC_Os01g07450.1 No alias transcription factor (MYB) 0.02 Archaeplastida
LOC_Os01g16810.1 No alias transcription factor (MYB) 0.05 Archaeplastida
LOC_Os01g36460.1 No alias transcription factor (MYB) 0.02 Archaeplastida
LOC_Os02g42870.1 No alias transcription factor (MYB) 0.08 Archaeplastida
LOC_Os03g25550.1 No alias transcription factor (MYB) 0.02 Archaeplastida
LOC_Os08g33800.1 No alias transcription factor (MYB) 0.07 Archaeplastida
LOC_Os09g24800.1 No alias transcription factor (MYB) 0.02 Archaeplastida
LOC_Os12g07640.1 No alias transcription factor (MYB) 0.02 Archaeplastida
MA_10431610g0040 No alias transcription factor (MYB) 0.04 Archaeplastida
MA_10433651g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_10435612g0010 No alias transcription factor (MYB) 0.05 Archaeplastida
MA_128244g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_14204g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_257850g0010 No alias transcription factor (MYB) 0.02 Archaeplastida
MA_51173g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
Pp3c12_10360V3.1 No alias myb domain protein 105 0.02 Archaeplastida
Pp3c17_7730V3.1 No alias myb domain protein 55 0.05 Archaeplastida
Pp3c1_1650V3.1 No alias myb domain protein 105 0.03 Archaeplastida
Pp3c1_4970V3.1 No alias myb domain protein 106 0.03 Archaeplastida
Pp3c6_9970V3.1 No alias myb domain protein 106 0.02 Archaeplastida
Pp3c7_23490V3.1 No alias myb domain protein 106 0.03 Archaeplastida
Smo6091 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
Smo80553 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
Solyc03g121740.3.1 No alias transcription factor (MYB) 0.04 Archaeplastida
Solyc05g007690.2.1 No alias transcription factor (MYB) 0.06 Archaeplastida
Solyc05g007710.3.1 No alias transcription factor (MYB) 0.05 Archaeplastida
Solyc06g009710.4.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc07g008010.4.1 No alias transcription factor (MYB) 0.07 Archaeplastida
Solyc08g082890.3.1 No alias transcription factor (MYB) 0.04 Archaeplastida
Solyc12g049350.2.1 No alias transcription factor (MYB) 0.04 Archaeplastida
Zm00001e004115_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e007085_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e011944_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e013452_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e015235_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e015239_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e017365_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e017428_P003 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e020044_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e020993_P002 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e028886_P003 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e034118_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e041239_P001 No alias transcription factor (MYB) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001005 SANT/Myb 172 215
IPR001005 SANT/Myb 120 165
No external refs found!