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  5. Solyc05g008890.3.1

Solyc05g008890.3.1


Description : ER-associated protein (Reticulon)


Gene families : OG0000225 (Archaeplastida) Phylogenetic Tree(s): OG0000225_tree ,
OG_05_0000137 (LandPlants) Phylogenetic Tree(s): OG_05_0000137_tree ,
OG_06_0000298 (SeedPlants) Phylogenetic Tree(s): OG_06_0000298_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g008890.3.1
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00230610 evm_27.TU.AmTr_v1... Reticulon-like protein B10 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00044p00221140 evm_27.TU.AmTr_v1... Reticulon-like protein B9 OS=Arabidopsis thaliana 0.08 Archaeplastida
AT1G68230 No alias Reticulon family protein 0.22 Archaeplastida
AT3G18260 No alias Reticulon family protein 0.24 Archaeplastida
AT4G23630 BTI1, RTNLB1 VIRB2-interacting protein 1 0.03 Archaeplastida
GSVIVT01008336001 No alias Reticulon-like protein B9 OS=Arabidopsis thaliana 0.21 Archaeplastida
GSVIVT01011845001 No alias Reticulon-like protein B9 OS=Arabidopsis thaliana 0.22 Archaeplastida
LOC_Os01g04640.1 No alias ER-associated protein (Reticulon) 0.04 Archaeplastida
LOC_Os01g49660.1 No alias ER-associated protein (Reticulon) 0.03 Archaeplastida
MA_654072g0010 No alias ER-associated protein (Reticulon) 0.13 Archaeplastida
Zm00001e014238_P002 No alias ER-associated protein (Reticulon) 0.02 Archaeplastida
Zm00001e027185_P001 No alias ER-associated protein (Reticulon) 0.03 Archaeplastida
Zm00001e028102_P001 No alias ER-associated protein (Reticulon) 0.04 Archaeplastida
Zm00001e032328_P001 No alias ER-associated protein (Reticulon) 0.13 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR003388 Reticulon 39 190
No external refs found!