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  5. AMTR_s00025p00156240

AMTR_s00025p00156240 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00025.176

Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.BBX/CONSTANS transcription factor


Gene families : OG0000884 (Archaeplastida) Phylogenetic Tree(s): OG0000884_tree ,
OG_05_0000594 (LandPlants) Phylogenetic Tree(s): OG_05_0000594_tree ,
OG_06_0000583 (SeedPlants) Phylogenetic Tree(s): OG_06_0000583_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00025p00156240
Cluster HCCA: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00073p00061640 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.04 Archaeplastida
AT1G73870 No alias B-box type zinc finger protein with CCT domain 0.05 Archaeplastida
GSVIVT01010855001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.03 Archaeplastida
LOC_Os02g49880.1 No alias transcription factor (BBX-CO) 0.12 Archaeplastida
LOC_Os03g50310.1 No alias transcription factor (BBX-CO) 0.05 Archaeplastida
LOC_Os06g15330.1 No alias transcription factor (BBX-CO) 0.06 Archaeplastida
Pp3c4_7080V3.1 No alias B-box type zinc finger protein with CCT domain 0.02 Archaeplastida
Pp3c8_1870V3.1 No alias B-box type zinc finger protein with CCT domain 0.02 Archaeplastida
Smo438000 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.02 Archaeplastida
Solyc04g007210.3.1 No alias transcription factor (BBX-CO) 0.04 Archaeplastida
Solyc05g009310.3.1 No alias transcription factor (BBX-CO) 0.03 Archaeplastida
Solyc07g008540.3.1 No alias transcription factor (BBX-CO) 0.05 Archaeplastida
Zm00001e012194_P001 No alias transcription factor (BBX-CO) 0.02 Archaeplastida
Zm00001e015732_P002 No alias transcription factor (BBX-CO) 0.04 Archaeplastida
Zm00001e030952_P002 No alias transcription factor (BBX-CO) 0.03 Archaeplastida
Zm00001e036760_P001 No alias transcription factor (BBX-CO) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001505 regulation of neurotransmitter levels IEP Neighborhood
MF GO:0004372 glycine hydroxymethyltransferase activity IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006536 glutamate metabolic process IEP Neighborhood
BP GO:0006537 glutamate biosynthetic process IEP Neighborhood
BP GO:0006544 glycine metabolic process IEP Neighborhood
BP GO:0006563 L-serine metabolic process IEP Neighborhood
BP GO:0006766 vitamin metabolic process IEP Neighborhood
BP GO:0006767 water-soluble vitamin metabolic process IEP Neighborhood
BP GO:0006772 thiamine metabolic process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009064 glutamine family amino acid metabolic process IEP Neighborhood
BP GO:0009069 serine family amino acid metabolic process IEP Neighborhood
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Neighborhood
BP GO:0009110 vitamin biosynthetic process IEP Neighborhood
BP GO:0009228 thiamine biosynthetic process IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
MF GO:0015930 glutamate synthase activity IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Neighborhood
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Neighborhood
MF GO:0016987 sigma factor activity IEP Neighborhood
BP GO:0017144 drug metabolic process IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
BP GO:0042133 neurotransmitter metabolic process IEP Neighborhood
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Neighborhood
BP GO:0042723 thiamine-containing compound metabolic process IEP Neighborhood
BP GO:0042724 thiamine-containing compound biosynthetic process IEP Neighborhood
BP GO:0043648 dicarboxylic acid metabolic process IEP Neighborhood
BP GO:0043650 dicarboxylic acid biosynthetic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044272 sulfur compound biosynthetic process IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Neighborhood
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
BP GO:1901605 alpha-amino acid metabolic process IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR010402 CCT_domain 382 425
No external refs found!