Description : subunit 3 of RNA polymerase
Gene families : OG0003132 (Archaeplastida) Phylogenetic Tree(s): OG0003132_tree ,
OG_05_0003373 (LandPlants) Phylogenetic Tree(s): OG_05_0003373_tree ,
OG_06_0004041 (SeedPlants) Phylogenetic Tree(s): OG_06_0004041_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Solyc05g010300.4.1 | |
Cluster | HCCA: Cluster_243 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00038p00194050 | evm_27.TU.AmTr_v1... | RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... | 0.03 | Archaeplastida | |
AT2G15430 | NRPB3, RPB35.5A,... | DNA-directed RNA polymerase family protein | 0.02 | Archaeplastida | |
GSVIVT01003174001 | No alias | RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... | 0.05 | Archaeplastida | |
MA_124184g0010 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida | |
Pp3c14_9440V3.1 | No alias | DNA-directed RNA polymerase family protein | 0.02 | Archaeplastida | |
Zm00001e009442_P002 | No alias | subunit 3 of RNA polymerase | 0.03 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEA | Interproscan |
BP | GO:0006351 | transcription, DNA-templated | IEA | Interproscan |
MF | GO:0046983 | protein dimerization activity | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001522 | pseudouridine synthesis | IEP | Neighborhood |
MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
MF | GO:0003677 | DNA binding | IEP | Neighborhood |
MF | GO:0003684 | damaged DNA binding | IEP | Neighborhood |
MF | GO:0003697 | single-stranded DNA binding | IEP | Neighborhood |
MF | GO:0003723 | RNA binding | IEP | Neighborhood |
MF | GO:0003906 | DNA-(apurinic or apyrimidinic site) endonuclease activity | IEP | Neighborhood |
BP | GO:0006259 | DNA metabolic process | IEP | Neighborhood |
BP | GO:0006281 | DNA repair | IEP | Neighborhood |
BP | GO:0006284 | base-excision repair | IEP | Neighborhood |
BP | GO:0006289 | nucleotide-excision repair | IEP | Neighborhood |
BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | Neighborhood |
MF | GO:0008097 | 5S rRNA binding | IEP | Neighborhood |
MF | GO:0008234 | cysteine-type peptidase activity | IEP | Neighborhood |
CC | GO:0008287 | protein serine/threonine phosphatase complex | IEP | Neighborhood |
BP | GO:0009451 | RNA modification | IEP | Neighborhood |
MF | GO:0009982 | pseudouridine synthase activity | IEP | Neighborhood |
BP | GO:0016579 | protein deubiquitination | IEP | Neighborhood |
MF | GO:0016799 | hydrolase activity, hydrolyzing N-glycosyl compounds | IEP | Neighborhood |
MF | GO:0016853 | isomerase activity | IEP | Neighborhood |
MF | GO:0016866 | intramolecular transferase activity | IEP | Neighborhood |
MF | GO:0017150 | tRNA dihydrouridine synthase activity | IEP | Neighborhood |
MF | GO:0019208 | phosphatase regulator activity | IEP | Neighborhood |
MF | GO:0019783 | ubiquitin-like protein-specific protease activity | IEP | Neighborhood |
MF | GO:0019888 | protein phosphatase regulator activity | IEP | Neighborhood |
CC | GO:0030289 | protein phosphatase 4 complex | IEP | Neighborhood |
BP | GO:0033554 | cellular response to stress | IEP | Neighborhood |
MF | GO:0036459 | thiol-dependent ubiquitinyl hydrolase activity | IEP | Neighborhood |
MF | GO:0042393 | histone binding | IEP | Neighborhood |
BP | GO:0051716 | cellular response to stimulus | IEP | Neighborhood |
BP | GO:0070646 | protein modification by small protein removal | IEP | Neighborhood |
BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | Neighborhood |
MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
MF | GO:0101005 | ubiquitinyl hydrolase activity | IEP | Neighborhood |
MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
CC | GO:1903293 | phosphatase complex | IEP | Neighborhood |
No external refs found! |