AMTR_s00025p00172020 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00025.206

Description : Pentatricopeptide repeat-containing protein At5g57250, mitochondrial OS=Arabidopsis thaliana

Gene families : OG0013971 (Archaeplastida) Phylogenetic Tree(s): OG0013971_tree ,
OG_05_0013884 (LandPlants) Phylogenetic Tree(s): OG_05_0013884_tree ,
OG_06_0012083 (SeedPlants) Phylogenetic Tree(s): OG_06_0012083_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00025p00172020
Cluster	HCCA: Cluster_144

Target	Alias	Description	ECC score	Gene Family Method	Actions
Zm00001e017320_P002	No alias	Pentatricopeptide repeat-containing protein At5g57250,...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

Type	GO Term	Name	Evidence	Source
MF	GO:0003964	RNA-directed DNA polymerase activity	IEP	Neighborhood
BP	GO:0006278	RNA-dependent DNA biosynthetic process	IEP	Neighborhood
MF	GO:0016763	transferase activity, transferring pentosyl groups	IEP	Neighborhood
MF	GO:0034061	DNA polymerase activity	IEP	Neighborhood
BP	GO:0071897	DNA biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	622	649
IPR002885	Pentatricopeptide_repeat	518	547
IPR002885	Pentatricopeptide_repeat	343	372
IPR002885	Pentatricopeptide_repeat	172	202
IPR002885	Pentatricopeptide_repeat	977	1002
IPR002885	Pentatricopeptide_repeat	206	253
IPR002885	Pentatricopeptide_repeat	374	423
IPR002885	Pentatricopeptide_repeat	445	492
IPR002885	Pentatricopeptide_repeat	652	700
IPR002885	Pentatricopeptide_repeat	756	804
IPR002885	Pentatricopeptide_repeat	276	322
IPR002885	Pentatricopeptide_repeat	718	749

External Links

No external refs found!