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  5. Solyc05g014000.4.1

Solyc05g014000.4.1


Description : pectate lyase


Gene families : OG0000134 (Archaeplastida) Phylogenetic Tree(s): OG0000134_tree ,
OG_05_0000111 (LandPlants) Phylogenetic Tree(s): OG_05_0000111_tree ,
OG_06_0000097 (SeedPlants) Phylogenetic Tree(s): OG_06_0000097_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g014000.4.1
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00120p00111300 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
AT3G01270 No alias Pectate lyase family protein 0.03 Archaeplastida
AT3G07010 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
AT3G24670 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT3G27400 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT4G24780 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
GSVIVT01003984001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
GSVIVT01016209001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
GSVIVT01024239001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
GSVIVT01028548001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
LOC_Os04g05050.1 No alias pectate lyase 0.03 Archaeplastida
LOC_Os06g05209.1 No alias pectate lyase 0.02 Archaeplastida
LOC_Os06g05260.1 No alias pectate lyase 0.03 Archaeplastida
LOC_Os06g38510.2 No alias pectate lyase 0.02 Archaeplastida
LOC_Os10g31910.1 No alias pectate lyase 0.03 Archaeplastida
MA_10430145g0020 No alias pectate lyase 0.02 Archaeplastida
MA_10430145g0030 No alias pectate lyase 0.05 Archaeplastida
MA_10437227g0030 No alias pectate lyase 0.03 Archaeplastida
MA_204440g0010 No alias Enzyme classification.EC_4 lyases.EC_4.2 carbon-oxygen... 0.05 Archaeplastida
MA_66914g0010 No alias pectate lyase 0.02 Archaeplastida
Pp3c10_20140V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c1_33130V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c1_35100V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c3_20320V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Smo439243 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
Solyc02g080910.4.1 No alias pectate lyase 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003839 gamma-glutamylcyclotransferase activity IEP Neighborhood
MF GO:0003993 acid phosphatase activity IEP Neighborhood
MF GO:0004133 glycogen debranching enzyme activity IEP Neighborhood
MF GO:0004134 4-alpha-glucanotransferase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004559 alpha-mannosidase activity IEP Neighborhood
MF GO:0004784 superoxide dismutase activity IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005985 sucrose metabolic process IEP Neighborhood
BP GO:0005996 monosaccharide metabolic process IEP Neighborhood
BP GO:0006013 mannose metabolic process IEP Neighborhood
BP GO:0006575 cellular modified amino acid metabolic process IEP Neighborhood
BP GO:0006749 glutathione metabolic process IEP Neighborhood
BP GO:0006751 glutathione catabolic process IEP Neighborhood
BP GO:0006801 superoxide metabolic process IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
MF GO:0015291 secondary active transmembrane transporter activity IEP Neighborhood
MF GO:0015297 antiporter activity IEP Neighborhood
MF GO:0015923 mannosidase activity IEP Neighborhood
MF GO:0016157 sucrose synthase activity IEP Neighborhood
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016840 carbon-nitrogen lyase activity IEP Neighborhood
MF GO:0016842 amidine-lyase activity IEP Neighborhood
BP GO:0019318 hexose metabolic process IEP Neighborhood
BP GO:0042219 cellular modified amino acid catabolic process IEP Neighborhood
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Neighborhood
BP GO:0043171 peptide catabolic process IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0044273 sulfur compound catabolic process IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
BP GO:0051187 cofactor catabolic process IEP Neighborhood
BP GO:0072593 reactive oxygen species metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002022 Pec_lyase 133 318
No external refs found!