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  5. Solyc05g015920.3.1

Solyc05g015920.3.1


Description : no hits & (original description: none)


Gene families : OG0001571 (Archaeplastida) Phylogenetic Tree(s): OG0001571_tree ,
OG_05_0002272 (LandPlants) Phylogenetic Tree(s): OG_05_0002272_tree ,
OG_06_0003762 (SeedPlants) Phylogenetic Tree(s): OG_06_0003762_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g015920.3.1
Cluster HCCA: Cluster_217

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00074580 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AT1G24300 No alias GYF domain-containing protein 0.05 Archaeplastida
AT1G27430 No alias GYF domain-containing protein 0.06 Archaeplastida
Cre04.g225350 No alias No description available 0.01 Archaeplastida
GSVIVT01000921001 No alias No description available 0.05 Archaeplastida
GSVIVT01000922001 No alias No description available 0.08 Archaeplastida
GSVIVT01009695001 No alias No description available 0.07 Archaeplastida
GSVIVT01033051001 No alias No description available 0.07 Archaeplastida
LOC_Os01g69990.1 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_10117g0030 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_10117g0040 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10425836g0010 No alias susceptibility factor (EXA1) 0.06 Archaeplastida
MA_10425836g0020 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_37559g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c12_12950V3.1 No alias GYF domain-containing protein 0.07 Archaeplastida
Pp3c12_13780V3.1 No alias GYF domain-containing protein 0.09 Archaeplastida
Pp3c4_9300V3.1 No alias GYF domain-containing protein 0.06 Archaeplastida
Smo438614 No alias No description available 0.05 Archaeplastida
Zm00001e028423_P003 No alias no hits & (original description: none) 0.07 Archaeplastida
Zm00001e028424_P001 No alias no hits & (original description: none) 0.08 Archaeplastida
Zm00001e032780_P001 No alias susceptibility factor (EXA1) 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000226 microtubule cytoskeleton organization IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003909 DNA ligase activity IEP Neighborhood
MF GO:0003910 DNA ligase (ATP) activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007051 spindle organization IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0031023 microtubule organizing center organization IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0051225 spindle assembly IEP Neighborhood
BP GO:0070925 organelle assembly IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR003169 GYF 517 558
No external refs found!