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  5. Solyc05g024010.3.1

Solyc05g024010.3.1


Description : transcription factor (BBX-CO)


Gene families : OG0000948 (Archaeplastida) Phylogenetic Tree(s): OG0000948_tree ,
OG_05_0005699 (LandPlants) Phylogenetic Tree(s): OG_05_0005699_tree ,
OG_06_0004574 (SeedPlants) Phylogenetic Tree(s): OG_06_0004574_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g024010.3.1
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00175210 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.04 Archaeplastida
AT1G28050 No alias B-box type zinc finger protein with CCT domain 0.07 Archaeplastida
AT3G07650 COL9 CONSTANS-like 9 0.17 Archaeplastida
AT5G48250 No alias B-box type zinc finger protein with CCT domain 0.05 Archaeplastida
GSVIVT01003473001 No alias Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis thaliana 0.05 Archaeplastida
Gb_28222 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os02g49230.2 No alias transcription factor (BBX-CO) 0.05 Archaeplastida
LOC_Os06g19444.1 No alias transcription factor (BBX-CO) 0.07 Archaeplastida
Pp3c5_12180V3.1 No alias CONSTANS-like 9 0.04 Archaeplastida
Smo444089 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.02 Archaeplastida
Zm00001e003699_P002 No alias transcription factor (BBX-CO) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003747 translation release factor activity IEP Neighborhood
BP GO:0006415 translational termination IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
MF GO:0008079 translation termination factor activity IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
MF GO:0009916 alternative oxidase activity IEP Neighborhood
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Neighborhood
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Neighborhood
BP GO:0022411 cellular component disassembly IEP Neighborhood
MF GO:0032977 membrane insertase activity IEP Neighborhood
BP GO:0032984 protein-containing complex disassembly IEP Neighborhood
BP GO:0035556 intracellular signal transduction IEP Neighborhood
BP GO:0043624 cellular protein complex disassembly IEP Neighborhood
InterPro domains Description Start Stop
IPR010402 CCT_domain 404 446
IPR000315 Znf_B-box 50 93
No external refs found!