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  5. Solyc05g041230.1.1

Solyc05g041230.1.1


Description : Photosystem II CP43 reaction center protein OS=Staurastrum punctulatum (sp|q32rs9|psbc_stapu : 162.0)


Gene families : OG0001539 (Archaeplastida) Phylogenetic Tree(s): OG0001539_tree ,
OG_05_0001136 (LandPlants) Phylogenetic Tree(s): OG_05_0001136_tree ,
OG_06_0000942 (SeedPlants) Phylogenetic Tree(s): OG_06_0000942_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g041230.1.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s01196p00010070 evm_27.TU.AmTr_v1... Photosystem II CP43 reaction center protein OS=Carica papaya 0.01 Archaeplastida
AMTR_s04036p00005710 evm_27.TU.AmTr_v1... Photosystem II CP43 reaction center protein... 0.01 Archaeplastida
ATCG00280 PSBC photosystem II reaction center protein C 0.01 Archaeplastida
GSVIVT01006662001 No alias Photosystem II CP43 reaction center protein OS=Platanus... 0.01 Archaeplastida
Gb_06826 No alias Photosystem II CP43 reaction center protein OS=Cycas... 0.01 Archaeplastida
Gb_11943 No alias Photosystem II CP43 reaction center protein... 0.01 Archaeplastida
Gb_19153 No alias Photosystem II CP43 reaction center protein... 0.01 Archaeplastida
Gb_22672 No alias Photosystem II CP43 reaction center protein... 0.01 Archaeplastida
LOC_Os02g24632.1 No alias component PsbC/CP43 of PS-II reaction center complex 0.03 Archaeplastida
LOC_Os04g16874.1 No alias component PsbC/CP43 of PS-II reaction center complex 0.02 Archaeplastida
LOC_Os10g21212.1 No alias component PsbC/CP43 of PS-II reaction center complex 0.03 Archaeplastida
Smo137689 No alias Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.04 Archaeplastida
Solyc00g500054.1.1 No alias component PsbD/D2 of PS-II reaction center complex.... 0.03 Archaeplastida
Solyc00g500136.1.1 No alias component PsbD/D2 of PS-II reaction center complex.... 0.03 Archaeplastida
Solyc00g500206.1.1 No alias component PsbD/D2 of PS-II reaction center complex.... 0.03 Archaeplastida
Solyc01g056470.1.1 No alias Photosystem II CP43 reaction center protein OS=Amborella... 0.04 Archaeplastida
Zm00001e042042_P001 No alias Photosystem II CP43 reaction center protein OS=Sorghum... 0.04 Archaeplastida
Zm00001e042172_P001 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0009521 photosystem IEA Interproscan
BP GO:0009767 photosynthetic electron transport chain IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016168 chlorophyll binding IEA Interproscan
BP GO:0019684 photosynthesis, light reaction IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006163 purine nucleotide metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006753 nucleoside phosphate metabolic process IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
BP GO:0009117 nucleotide metabolic process IEP Neighborhood
BP GO:0009123 nucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009141 nucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009150 purine ribonucleotide metabolic process IEP Neighborhood
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009259 ribonucleotide metabolic process IEP Neighborhood
BP GO:0015672 monovalent inorganic cation transport IEP Neighborhood
BP GO:0017144 drug metabolic process IEP Neighborhood
BP GO:0019637 organophosphate metabolic process IEP Neighborhood
BP GO:0019693 ribose phosphate metabolic process IEP Neighborhood
BP GO:0034220 ion transmembrane transport IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
BP GO:0046034 ATP metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Neighborhood
BP GO:0072521 purine-containing compound metabolic process IEP Neighborhood
BP GO:0098655 cation transmembrane transport IEP Neighborhood
BP GO:0098660 inorganic ion transmembrane transport IEP Neighborhood
BP GO:0098662 inorganic cation transmembrane transport IEP Neighborhood
BP GO:1901135 carbohydrate derivative metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1902600 proton transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR000932 PS_antenna-like 34 98
No external refs found!