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  5. Solyc05g045826.1.1

Solyc05g045826.1.1


Description : Ribosomal protein S3, mitochondrial OS=Petunia hybrida (sp|q04716|rt03_pethy : 95.5)


Gene families : OG0005073 (Archaeplastida) Phylogenetic Tree(s): OG0005073_tree ,
OG_05_0002674 (LandPlants) Phylogenetic Tree(s): OG_05_0002674_tree ,
OG_06_0001420 (SeedPlants) Phylogenetic Tree(s): OG_06_0001420_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g045826.1.1
Cluster HCCA: Cluster_320

Target Alias Description ECC score Gene Family Method Actions
ATMG00090 No alias structural constituent of ribosome;protein binding 0.01 Archaeplastida
Gb_13807 No alias Ribosomal protein S3, mitochondrial OS=Zea mays... 0.03 Archaeplastida
Solyc00g500100.1.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc00g500245.1.1 No alias component mtRPL16 of large ribosomal subunit proteome.... 0.02 Archaeplastida
Solyc00g500274.1.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc00g500309.1.1 No alias no hits & (original description: none) 0.1 Archaeplastida
Zm00001e037170_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e037207_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e037209_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e037214_P001 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!