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  5. AMTR_s00025p00213220

AMTR_s00025p00213220 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00025.285

Description : RanBP2-type zinc finger protein At1g67325 OS=Arabidopsis thaliana


Gene families : OG0004588 (Archaeplastida) Phylogenetic Tree(s): OG0004588_tree ,
OG_05_0003728 (LandPlants) Phylogenetic Tree(s): OG_05_0003728_tree ,
OG_06_0003599 (SeedPlants) Phylogenetic Tree(s): OG_06_0003599_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00025p00213220
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01010495001 No alias RanBP2-type zinc finger protein At1g67325 OS=Arabidopsis thaliana 0.06 Archaeplastida
MA_10427843g0020 No alias RanBP2-type zinc finger protein At1g67325 OS=Arabidopsis... 0.02 Archaeplastida
Smo153690 No alias RanBP2-type zinc finger protein At1g67325 OS=Arabidopsis thaliana 0.02 Archaeplastida
Solyc05g015500.4.1 No alias RanBP2-type zinc finger protein At1g67325 OS=Arabidopsis... 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005622 intracellular IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004427 inorganic diphosphatase activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
MF GO:0009678 hydrogen-translocating pyrophosphatase activity IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001876 Znf_RanBP2 22 44
IPR001876 Znf_RanBP2 238 269
IPR001876 Znf_RanBP2 192 220
No external refs found!