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  5. Solyc05g048740.3.1

Solyc05g048740.3.1


Description : transcription factor (AS2/LOB)


Gene families : OG0000101 (Archaeplastida) Phylogenetic Tree(s): OG0000101_tree ,
OG_05_0000037 (LandPlants) Phylogenetic Tree(s): OG_05_0000037_tree ,
OG_06_0000043 (SeedPlants) Phylogenetic Tree(s): OG_06_0000043_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g048740.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00227160 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.1 Archaeplastida
AMTR_s00080p00153120 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.01 Archaeplastida
AT1G31320 LBD4 LOB domain-containing protein 4 0.02 Archaeplastida
AT2G28500 LBD11 LOB domain-containing protein 11 0.01 Archaeplastida
AT2G30340 LBD13 LOB domain-containing protein 13 0.01 Archaeplastida
AT2G40470 LBD15, ASL11 LOB domain-containing protein 15 0.01 Archaeplastida
AT3G27650 LBD25 LOB domain-containing protein 25 0.1 Archaeplastida
AT5G63090 LOB Lateral organ boundaries (LOB) domain family protein 0.02 Archaeplastida
GSVIVT01003546001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 Archaeplastida
GSVIVT01004323001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 Archaeplastida
GSVIVT01010625001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.07 Archaeplastida
GSVIVT01016330001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 Archaeplastida
GSVIVT01018486001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.08 Archaeplastida
GSVIVT01032592001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.02 Archaeplastida
GSVIVT01032714001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.01 Archaeplastida
GSVIVT01032752001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.02 Archaeplastida
Gb_00144 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Gb_10524 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Gb_16914 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Gb_19384 No alias transcription factor (AS2/LOB) 0.09 Archaeplastida
Gb_19720 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Gb_20676 No alias transcription factor (AS2/LOB) 0.05 Archaeplastida
Gb_29853 No alias transcription factor (AS2/LOB) 0.01 Archaeplastida
LOC_Os01g14030.1 No alias transcription factor (AS2/LOB) 0.01 Archaeplastida
LOC_Os03g17810.1 No alias transcription factor (AS2/LOB) 0.01 Archaeplastida
LOC_Os05g07270.1 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
LOC_Os05g27980.1 No alias transcription factor (AS2/LOB) 0.01 Archaeplastida
MA_292200g0010 No alias transcription factor (AS2/LOB) 0.01 Archaeplastida
MA_88711g0010 No alias transcription factor (AS2/LOB) 0.01 Archaeplastida
Mp7g17250.1 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Solyc06g050950.3.1 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Solyc06g071660.3.1 No alias transcription factor (AS2/LOB) 0.14 Archaeplastida
Solyc06g082310.3.1 No alias transcription factor (AS2/LOB) 0.01 Archaeplastida
Zm00001e019004_P002 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Zm00001e026736_P001 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Zm00001e030195_P001 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Zm00001e031510_P001 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
MF GO:0010333 terpene synthase activity IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016835 carbon-oxygen lyase activity IEP Neighborhood
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
InterPro domains Description Start Stop
IPR004883 LOB 54 151
No external refs found!