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  5. Solyc05g049870.3.1

Solyc05g049870.3.1


Description : transcription factor (LIM)


Gene families : OG0000926 (Archaeplastida) Phylogenetic Tree(s): OG0000926_tree ,
OG_05_0000998 (LandPlants) Phylogenetic Tree(s): OG_05_0000998_tree ,
OG_06_0003083 (SeedPlants) Phylogenetic Tree(s): OG_06_0003083_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g049870.3.1
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00259550 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.LIM... 0.02 Archaeplastida
AT2G39900 No alias GATA type zinc finger transcription factor family protein 0.03 Archaeplastida
AT2G45800 No alias GATA type zinc finger transcription factor family protein 0.03 Archaeplastida
AT3G61230 No alias GATA type zinc finger transcription factor family protein 0.02 Archaeplastida
LOC_Os10g35930.1 No alias transcription factor (LIM) 0.02 Archaeplastida
Solyc01g094320.3.1 No alias transcription factor (LIM) 0.05 Archaeplastida
Solyc08g007940.4.1 No alias transcription factor (LIM) 0.06 Archaeplastida
Solyc10g017520.3.1 No alias transcription factor (LIM) 0.06 Archaeplastida
Solyc11g044740.2.1 No alias transcription factor (LIM) 0.04 Archaeplastida
Zm00001e007423_P001 No alias transcription factor (LIM) 0.05 Archaeplastida
Zm00001e015234_P001 No alias transcription factor (LIM) 0.02 Archaeplastida
Zm00001e023098_P001 No alias transcription factor (LIM) 0.06 Archaeplastida
Zm00001e041310_P001 No alias transcription factor (LIM) 0.09 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006820 anion transport IEP Neighborhood
BP GO:0006835 dicarboxylic acid transport IEP Neighborhood
BP GO:0015711 organic anion transport IEP Neighborhood
BP GO:0015740 C4-dicarboxylate transport IEP Neighborhood
BP GO:0015743 malate transport IEP Neighborhood
BP GO:0015849 organic acid transport IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0017048 Rho GTPase binding IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
BP GO:0046942 carboxylic acid transport IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
InterPro domains Description Start Stop
IPR001781 Znf_LIM 106 161
IPR001781 Znf_LIM 10 65
No external refs found!