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  5. AMTR_s00025p00218280

AMTR_s00025p00218280 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00025.301

Description : Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00025p00218280

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01035618001 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.04 Archaeplastida
MA_41229g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Smo105729 No alias Pentatricopeptide repeat-containing protein At2g03380,... 0.06 Archaeplastida
Smo34426 No alias Pentatricopeptide repeat-containing protein At4g14820... 0.04 Archaeplastida
Smo98426 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP Neighborhood
MF GO:0016151 nickel cation binding IEP Neighborhood
MF GO:0043531 ADP binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 387 416
IPR002885 Pentatricopeptide_repeat 358 385
IPR002885 Pentatricopeptide_repeat 457 486
IPR002885 Pentatricopeptide_repeat 105 132
IPR002885 Pentatricopeptide_repeat 283 329
IPR002885 Pentatricopeptide_repeat 134 181
No external refs found!