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  5. Solyc05g050860.2.1

Solyc05g050860.2.1


Description : C2H2 zinc finger transcription factor


Gene families : OG0000103 (Archaeplastida) Phylogenetic Tree(s): OG0000103_tree ,
OG_05_0000039 (LandPlants) Phylogenetic Tree(s): OG_05_0000039_tree ,
OG_06_0000340 (SeedPlants) Phylogenetic Tree(s): OG_06_0000340_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g050860.2.1
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00106p00120810 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.06 Archaeplastida
AMTR_s00110p00085760 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
AT1G02040 No alias C2H2-type zinc finger family protein 0.05 Archaeplastida
AT3G10470 No alias C2H2-type zinc finger family protein 0.03 Archaeplastida
AT5G04390 No alias C2H2-type zinc finger family protein 0.03 Archaeplastida
GSVIVT01023887001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.05 Archaeplastida
Gb_37343 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
LOC_Os02g44120.1 No alias C2H2 zinc finger transcription factor 0.09 Archaeplastida
LOC_Os04g46670.1 No alias C2H2 zinc finger transcription factor 0.07 Archaeplastida
Solyc05g054660.2.1 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Zm00001e002344_P001 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Zm00001e007312_P001 No alias C2H2 zinc finger transcription factor 0.08 Archaeplastida
Zm00001e038054_P001 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
Zm00001e041518_P001 No alias C2H2 zinc finger transcription factor 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
MF GO:0004427 inorganic diphosphatase activity IEP Neighborhood
MF GO:0005319 lipid transporter activity IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
BP GO:0006813 potassium ion transport IEP Neighborhood
BP GO:0006835 dicarboxylic acid transport IEP Neighborhood
BP GO:0006869 lipid transport IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
BP GO:0010215 cellulose microfibril organization IEP Neighborhood
MF GO:0015079 potassium ion transmembrane transporter activity IEP Neighborhood
BP GO:0015711 organic anion transport IEP Neighborhood
BP GO:0015740 C4-dicarboxylate transport IEP Neighborhood
BP GO:0015743 malate transport IEP Neighborhood
BP GO:0015849 organic acid transport IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
BP GO:0030198 extracellular matrix organization IEP Neighborhood
CC GO:0031225 anchored component of membrane IEP Neighborhood
BP GO:0043062 extracellular structure organization IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
BP GO:0046942 carboxylic acid transport IEP Neighborhood
BP GO:0061024 membrane organization IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071804 cellular potassium ion transport IEP Neighborhood
BP GO:0071805 potassium ion transmembrane transport IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0120009 intermembrane lipid transfer IEP Neighborhood
MF GO:0120013 intermembrane lipid transfer activity IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!