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  5. Solyc06g074250.3.1

Solyc06g074250.3.1


Description : VAMP7-type R-type SNARE longin proteinBLAST

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  3. Solanum lycopersicum
  4. Sequence
  5. Solyc05g051680.4.1

Solyc05g051680.4.1


Description : component SMC6 of homologous recombination repair Smc5-Smc6 complex


Gene families : OG0003544 (Archaeplastida) Phylogenetic Tree(s): OG0003544_tree ,
OG_05_0004204 (LandPlants) Phylogenetic Tree(s): OG_05_0004204_tree ,
OG_06_0005488 (SeedPlants) Phylogenetic Tree(s): OG_06_0005488_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g051680.4.1
Cluster HCCA: Cluster_173

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00106p00113730 evm_27.TU.AmTr_v1... DNA damage response.DNA repair mechanisms.homologous... 0.04 Archaeplastida
AT5G07660 SMC6A structural maintenance of chromosomes 6A 0.03 Archaeplastida
AT5G61460 ATRAD18, SMC6B, MIM P-loop containing nucleoside triphosphate hydrolases... 0.03 Archaeplastida
Cpa|evm.model.tig00000600.10 No alias DNA damage response.DNA repair mechanisms.homologous... 0.01 Archaeplastida
Gb_31282 No alias component SMC6 of homologous recombination repair... 0.03 Archaeplastida
MA_10433074g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_9752383g0010 No alias Structural maintenance of chromosomes protein 6B... 0.04 Archaeplastida
Pp3c11_11190V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Archaeplastida
Zm00001e033734_P001 No alias component SMC6 of homologous recombination repair... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006338 chromatin remodeling IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
CC GO:0016459 myosin complex IEP Neighborhood
MF GO:0017025 TBP-class protein binding IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
MF GO:0031491 nucleosome binding IEP Neighborhood
BP GO:0043044 ATP-dependent chromatin remodeling IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR003395 RecF/RecN/SMC_N 18 1044
No external refs found!